dot-scatterPlotComplex: Creates a complex scatter plot

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Creates a complex scatter plot

Usage

.scatterPlotComplex(df.union, df1, df2, name1, name2, cloneClass)

Arguments

df.union	a 'lossless' dataframe created by intersecting sample1 and sample2's dataframes. It should contain NAs where clones that appear in one sample doesn't appear in the other. For example: +————————————————-+ | Clonotype | prop.x | prop.y | Count.x | Count.y | +————————————————-+ | ABCDEF NA 0.01 NA 210 | | ...... | +————————————————-+
df1	dataframe for sample 1
df2	dataframe for sample 2
name1	string type, Sample 1 name
name2	string type. Sample 2 name
cloneClass	string type. What region was used to classify clonotypes - appears in title. For example, CDR3 or V region this plotting techique was shamelessly plagarised from https://github.com/mikessh/vdjtools/blob/master/src/main/resources/rscripts/intersect_pair_scatter.r (VDJTools) with minor modifications

Value

ggplot2 object

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.