dot-secretionSignalAnalysis: Secretion signal analysis

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Generates all the required plots for Secretion signal analysis. This includes upstream length distributions and upstream sequence validity.

Usage

.secretionSignalAnalysis(secDirectories, secOut, sampleNames,
  combinedNames, mashedNames, upstreamRanges, .save = TRUE)

Arguments

secDirectories	list type. Secretion signal directories where files are located
secOut	string type. Where to dump output
sampleNames	vector type. 1-1 with secDirectories
combinedNames	string type. Title friendly string
mashedNames	string type. File name friendly string
upstreamRanges	list type. Upstream ranges for each sample. If length(secDirectories) > 1, the plots will only be generated for upstream ranges that are present in ALL samples. (i.e. the intersection)
.save	logical type, save Rdata?

Value

none

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.