dot-plotPrimerIntegrity: Plots the distribution of primer integrity for a given...

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Plots the distribution of primer integrity for a given category and 5' or 3' pend

Usage

.plotPrimerIntegrity(primerIntegrity, pend, category, primerDirectories,
  sampleNames, primerOut, combinedNames, mashedNames, .save = TRUE)

Arguments

primerIntegrity	string. One of "stopcodon", "integrity", "indelled", "indel_pos"
pend	string, either 3 or 5 (primer end)
category	string, either "all", "productive", or "outframe"
primerDirectories	string type. Path to primer analysis directory
sampleNames	vector type. 1-1 with primerDirectories
primerOut	string type. output directory
combinedNames	string type. Title friendly "combined" sample names
mashedNames	string type. File friendly "mashed-up" sample names
.save	logical type. Save Rdata?

Value

None

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.