dot-readSummary: Return value specifed by key from AbSeq's summary file

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Return value specifed by key from AbSeq's summary file

Usage

.readSummary(sampleRoot, key)

Arguments

sampleRoot	sample's root directory. For example, /path/to/<outputdir>/reports/<sample_name>.
key	character type. Possible values are (though they might change) RawReads AnnotatedReads FilteredReads ProductiveReads

Value

value associated with key from summary file. "NA" (in string) if the field is not available refer to util.R for the key values

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.