plus-AbSeqRep-AbSeqCRep-method: Combines a AbSeqRep object with a AbSeqCRep object together...

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Combines a AbSeqRep object with a AbSeqCRep object together for comparison

Usage

## S4 method for signature 'AbSeqRep,AbSeqCRep'
e1 + e2

Arguments

e1	AbSeqRep.
e2	AbSeqCRep.

Value

AbSeqCRep object. Calling abseqR's functions on this object will always result in a comparison.

See Also

abseqReport returns a list of AbSeqReps

Examples

# Use example data from abseqR as abseqPy's output, substitute this
# with your own abseqPy output directory
abseqPyOutput <- tempdir()
file.copy(system.file("extdata", "ex", package = "abseqR"), abseqPyOutput, recursive=TRUE)
samples <- abseqReport(file.path(abseqPyOutput, "ex"), report = 0)

# The provided example data has PCR1, PCR2, and PCR3 samples contained within
# pcr1 is an instance of AbSeqRep
pcr1 <- samples[["PCR1"]]
# pcr23 is instance of AbSeqCRep
pcr23 <- samples[["PCR2"]] + samples[["PCR3"]]

# pcr123 is an instance of AbSeqCRep
pcr123 <- pcr1 + pcr23

# you can now call the report function on this object
# report(pcr123)           # uncomment this line to execute report

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.