dot-plotSamples: Monolith AbSeq Plot function - the "driver" program

In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries

Description

Monolith AbSeq Plot function - the "driver" program

Usage

.plotSamples(sampleNames, directories, analysis, outputDir, primer5Files,
  primer3Files, upstreamRanges, skipDgene = FALSE)

Arguments

sampleNames	vector type. Vector of sample names in strings
directories	vector type. Vector of directories in strings, must be 1-1 with sampleNames
analysis	vector / list type. What analysis to plot for. If sampleNames or directories is > 1 (i.e. AbSeqCRep), then make sure that it's an intersection of all analysis conducted by the repertoires, otherwise, it wouldn't make sense
outputDir	string type. Where to dump the output
primer5Files	vector / list type. Collection of strings that the sample used for primer5 analysis. If sample N doesn't have a primer 5 file, leave it as anthing but a valid file path.
primer3Files	vector / list type. Collection of strings that the sample used for primer 3 analysis. If sample N doesn't have a primer 3 file, leave it as anthing but a valid file path.
upstreamRanges	list type. Collection of "None"s or vector denoting upstreamStart and upstreamEnd for each sample.
skipDgene	logical type. Whether or not to skip D gene distribution plot

Value

none

abseqR documentation built on Nov. 8, 2020, 8:28 p.m.