dot-plotRarefaction: Rarefaction plot
In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
Description
Usage
Arguments
Value
Description
Plots the number of unique clonotypes (on the y-axis)
drawn from a sample size on the x axis. The number of unique clonotypes
is averaged over 5 repeated rounds.
Usage
1
.plotRarefaction(files, sampleNames, regions = c("CDR3", "V"))
Arguments
files
list type. A list of files consisting of path to samples
sampleNames
vector type. A vector of strings,
each being the name of samples in files
regions
vector type. A vector of strings,
regions to be included. Defaults to c("CDR3", "V")
Value
ggplot2 object
abseqR documentation built on Nov. 8, 2020, 8:28 p.m.
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Description Usage Arguments Value
Description
Plots the number of unique clonotypes (on the y-axis) drawn from a sample size on the x axis. The number of unique clonotypes is averaged over 5 repeated rounds.
Usage
1 | .plotRarefaction(files, sampleNames, regions = c("CDR3", "V"))
|
Arguments
files |
list type. A list of files consisting of path to samples |
sampleNames |
vector type. A vector of strings, each being the name of samples in files |
regions |
vector type. A vector of strings, regions to be included. Defaults to c("CDR3", "V") |
Value
ggplot2 object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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