dot-reportLBE: Reports abundance-based (Lower bound) diversity estimates...
In abseqR: Reporting and data analysis functionalities for Rep-Seq datasets of antibody libraries
Description
Usage
Arguments
Value
Description
Reports abundance-based (Lower bound) diversity estimates using the Vegan package
Usage
1
Arguments
df
clonotype dataframe. Vegan format:
+—————————+
| S.1| S.2| S.3 | S.4 | ... | (each species should have its own column)
+—————————+
| v1 |v2 | v3 | .... | (each species' count values are placed in the corresponding column)
+—————————+
Value
dataframe with the format:
+—————————————————————-+
| S.obs | S.chao1 | se.chao1 | S.ACE | se.ACE | s.jack1 | s.jack2|
+—————————————————————-+
| v1 | v2 .... |
+—————————————————————-+
abseqR documentation built on Nov. 8, 2020, 8:28 p.m.
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Description Usage Arguments Value
Description
Reports abundance-based (Lower bound) diversity estimates using the Vegan package
Usage
1 |
Arguments
df |
clonotype dataframe. Vegan format: +—————————+ | S.1| S.2| S.3 | S.4 | ... | (each species should have its own column) +—————————+ | v1 |v2 | v3 | .... | (each species' count values are placed in the corresponding column) +—————————+ |
Value
dataframe with the format: +—————————————————————-+ | S.obs | S.chao1 | se.chao1 | S.ACE | se.ACE | s.jack1 | s.jack2| +—————————————————————-+ | v1 | v2 .... | +—————————————————————-+
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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