wenbostar/PGA: An package for identification of novel peptides by customized database derived from RNA-Seq

This package provides functions for construction of customized protein databases based on RNA-Seq data with/without genome guided, database searching, post-processing and report generation. This kind of customized protein database includes both the reference database (such as Refseq or ENSEMBL) and the novel peptide sequences form RNA-Seq data.

Package details

AuthorShaohang Xu, Bo Wen
Bioconductor views ImmunoOncology MassSpectrometry Proteomics RNASeq ReportWriting Sequencing Software
MaintainerBo Wen <wenbostar@gmail.com>, Shaohang Xu <xsh.skye@gmail.com>
LicenseGPL-2
Version1.15.4
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("wenbostar/PGA")
wenbostar/PGA documentation built on June 11, 2021, 12:46 a.m.