GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

This package provides a Shiny application that aims to combine at different levels the existing pieces of the transcriptome data and results, in a way that makes it easier to generate insightful observations and hypothesis - combining the benefits of interactivity and reproducibility, e.g. by capturing the features and gene sets of interest highlighted during the live session, and creating an HTML report as an artifact where text, code, and output coexist.

Getting started

Package details

AuthorFederico Marini [aut, cre] (<>)
Bioconductor views Annotation DifferentialExpression GO GUI GeneExpression GeneSetEnrichment Pathways ReportWriting Software Transcription Transcriptomics Visualization
MaintainerFederico Marini <>
LicenseMIT + file LICENSE
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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GeneTonic documentation built on Nov. 8, 2020, 5:27 p.m.