shake_davidResult: Convert the output of DAVID

In GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

Description

Convert the output of DAVID for straightforward use in GeneTonic()

Usage

shake_davidResult(david_output_file)

Arguments

david_output_file

The location of the text file output, as exported from DAVID

Value

A data.frame compatible for use in GeneTonic() as res_enrich

See Also

Other shakers: shake_enrichResult(), shake_enrichrResult(), shake_fgseaResult(), shake_gprofilerResult(), shake_topGOtableResult()

Examples

david_output_file <- system.file("extdata", 
                                 "david_output_chart_BPonly_ifng_vs_naive.txt", 
                                 package = "GeneTonic")
res_enrich <- shake_davidResult(david_output_file)

GeneTonic documentation built on Nov. 8, 2020, 5:27 p.m.