Files in GeneTonic

Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis

NEWS.md README.md

NAMESPACE

DESCRIPTION

LICENSE

build/vignette.rds

data/res_de_macrophage.RData

data/datalist

data/res_enrich_macrophage.RData

data/gostres_macrophage.RData

data/enrichr_output_macrophage.RData

data/fgseaRes.RData

R/GeneTonic-pkg.R R/GeneTonic.R R/gene_plot.R R/gs_shaker.R R/export_for_iSEE.R R/gs_distances.R R/gs_mds.R R/gs_volcano.R R/check_inputs.R R/gs_alluvial.R R/ggs_graph.R R/enrichment_map.R R/happy_hour.R R/GeneTonic-data.R R/enhance_table.R R/gs_simplify.R R/gs_dendro.R R/gs_heatmap.R R/GeneTonic-extras.R R/gs_radar.R R/gs_summaries.R R/gs_cluster.R vignettes/GeneTonic_manual.Rmd

vignettes/GeneTonic.bib

man/get_aggrscores.Rd man/enrichr_output_macrophage.Rd man/shake_davidResult.Rd man/dot-check_pandoc.Rd man/GeneTonic-pkg.Rd man/ggs_graph.Rd man/gs_volcano.Rd man/gs_summary_heat.Rd man/shake_enrichrResult.Rd man/overlap_jaccard_index.Rd man/cluster_markov.Rd man/gs_scoresheat.Rd man/deseqresult2df.Rd man/gs_dendro.Rd man/check_colors.Rd man/overlap_coefficient.Rd man/geneinfo_2_html.Rd man/shake_topGOtableResult.Rd man/GeneTonic.Rd man/res_macrophage_IFNg_vs_naive.Rd man/distill_enrichment.Rd man/export_for_iSEE.Rd man/gostres_macrophage.Rd man/gs_simplify.Rd man/gs_alluvial.Rd man/gs_horizon.Rd man/checkup_GeneTonic.Rd man/gs_radar.Rd man/get_expression_values.Rd man/enhance_table.Rd man/gs_scores.Rd man/gs_mds.Rd man/happy_hour.Rd man/gene_plot.Rd man/gs_summary_overview.Rd man/shake_gprofilerResult.Rd man/shake_enrichResult.Rd man/topgoDE_macrophage_IFNg_vs_naive.Rd man/shake_fgseaResult.Rd man/enrichment_map.Rd man/create_kappa_matrix.Rd man/fgseaRes.Rd man/gs_heatmap.Rd man/export_to_sif.Rd man/go_2_html.Rd man/map2color.Rd man/gs_summary_overview_pair.Rd man/styleColorBar_divergent.Rd man/create_jaccard_matrix.Rd tests/testthat.R tests/testthat/test-enhance_tables.R tests/testthat/test-check_inputs.R tests/testthat/test-gs_simplify.R tests/testthat/test-export_for_iSEE.R tests/testthat/test-happy_hour.R tests/testthat/test-gs_heatmap.R tests/testthat/test-gs_dendro.R tests/testthat/test-gs_alluvial.R tests/testthat/test-enrichment_map.R tests/testthat/test-gs_summaries.R tests/testthat/test-gs_volcano.R tests/testthat/test-gs_distances.R tests/testthat/test-gs_radar.R tests/testthat/test-gs_shaker.R tests/testthat/test-gene_plot.R tests/testthat/test-gs_mds.R tests/testthat/test-ggs_graph.R tests/testthat/setuptests_genetonic.R tests/testthat/test-gs_cluster.R tests/testthat/test-gs_scores.R tests/testthat/test-GeneTonic_extras.R tests/testthat/test-GeneTonic.R inst/doc/GeneTonic_manual.Rmd

inst/doc/GeneTonic_manual.html

inst/doc/GeneTonic_manual.R

inst/www/GeneTonic.png

inst/extdata/cocktail_recipe.Rmd

inst/extdata/topgotable_res_IFNg_vs_naive.txt

inst/extdata/tour_emap.txt

inst/extdata/tour_bookmarks.txt

inst/extdata/enrichr_tblexport_IFNg_vs_naive.txt

inst/extdata/tour_overview.txt

inst/extdata/tour_welcome.txt

inst/extdata/david_output_chart_BPonly_ifng_vs_naive.txt

inst/extdata/GeneTonic101.md

inst/extdata/tour_gsviz.txt

inst/extdata/tour_ggs.txt

inst/extdata/about.md

inst/extdata/gProfiler_hsapiens_5-25-2020_tblexport_IFNg_vs_naive.csv

inst/scripts/create_gt_data.R

GeneTonic documentation built on Nov. 8, 2020, 5:27 p.m.