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annmap: Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.
Browse package contents
Package details |
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| Author | Tim Yates <Tim.Yates@cruk.manchester.ac.uk> |
| Bioconductor views | Annotation Microarray OneChannel ReportWriting Transcription Visualization |
| Maintainer | Chris Wirth <Christopher.Wirth@cruk.manchester.ac.uk> |
| License | GPL-2 |
| Version | 1.30.0 |
| URL | http://annmap.cruk.manchester.ac.uk |
| Package repository | View on Bioconductor |
| Installation |
Install the latest version of this package by entering the following in R:
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