annmap.details: annmap 'details' functions

In annmap: Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.

Description

Get detailed annotations for the specified features.

Usage

  arrayDetails( ids, as.data.frame=FALSE )
  chromosomeDetails( ids, as.data.frame=FALSE )
  domainDetails( ids, as.data.frame=FALSE )
  estExonDetails( ids, as.data.frame=FALSE )
  estGeneDetails( ids, as.data.frame=FALSE )
  estTranscriptDetails( ids, as.data.frame=FALSE )
  exonDetails( ids, as.data.frame=FALSE )
  geneDetails( ids, as.data.frame=FALSE )
  predictionTranscriptDetails( ids, as.data.frame=FALSE )
  probeDetails( ids, as.data.frame=FALSE )
  probesetDetails( ids, as.data.frame=FALSE )
  proteinDetails( ids, as.data.frame=FALSE )
  synonymDetails( ids, as.data.frame=FALSE )
  transcriptDetails( ids, as.data.frame=FALSE )

Arguments

ids	Database identifiers for the features of interest
as.data.frame	If FALSE, data will be converted to a GRanges object if possible, otherwise a data.frame

Value

Results in an GRanges object (or a data.frame if TRUE is passed for the second parameter), one \'row\' per feature, containing detailed annotations.

Author(s)

Tim Yates

See Also

annmapTo
annmapAll
annmapRange
annmapUtils
annmapFilters
GRanges

Examples

 
  if(interactive()) {
    annmapConnect()
    geneDetails(symbolToGene("TP53"))
  }

annmap documentation built on Nov. 8, 2020, 7:43 p.m.