ArrayTools: geneChip Analysis Package

This package is designed to provide solutions for quality assessment and to detect differentially expressed genes for the Affymetrix GeneChips, including both 3' -arrays and gene 1.0-ST arrays. The package generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.

Getting started

Package details

AuthorXiwei Wu, Arthur Li
Bioconductor views Annotation DifferentialExpression Microarray OneChannel Preprocessing QualityControl ReportWriting StatisticalMethod Visualization
MaintainerArthur Li <>
LicenseLGPL (>= 2.0)
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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ArrayTools documentation built on Nov. 8, 2020, 8:13 p.m.