selectSigGene: select differentially expressed genes from the regressResult...

Description Usage Arguments Value Author(s) Examples

Description

select differentially expressed genes based on p value and/or fold change from the regressResult class

Usage

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selectSigGene(object, p.value = 0.05, fc.value = 0)

Arguments

object

an regressResult class

p.value

p value

fc.value

fold change cut-off value

Value

an regressResult

Author(s)

Xiwei Wu, Arthur Li

Examples

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data(eSetExample)
design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment")
contrast<- new("contrastMatrix", design.matrix = design, 
    compare1 = "Treated", compare2 = "Control")
result<- regress(eSetExample, contrast)
sigResult<- selectSigGene(result, fc.value=log2(2)) 

ArrayTools documentation built on Nov. 1, 2018, 3:35 a.m.