createIngenuityFile: A Wrapper Function to Create Files for Ingenuity Analysis

In ArrayTools: geneChip Analysis Package

Description

A Wrapper Function to Create Files for Ingenuity Analysis

Usage

createIngenuityFile(..., mydir = getwd(), eSet, filename = "IngenuityFile")

Arguments

...	a list of regressResult class
mydir	the directory where you would like to store the file
eSet	an ExpressionSet
filename	file name

Details

This function enable to create the ingenuity upload file based on a list of regressResult

Value

create an Ingenuity upload file

Author(s)

Xiwei Wu, Arthur Li

References

http://www.ingenuity.com/

Examples

data(eSetExample)
design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment")
contrast<- new("contrastMatrix", design.matrix = design, 
    compare1 = "Treated", compare2 = "Control")
result<- regress(eSetExample, contrast)
## Not run: createIngenuityFile(result, eSet = eSetExample)

ArrayTools documentation built on Nov. 8, 2020, 8:13 p.m.