createIngenuityFile: A Wrapper Function to Create Files for Ingenuity Analysis

Description Usage Arguments Details Value Author(s) References Examples

Description

A Wrapper Function to Create Files for Ingenuity Analysis

Usage

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createIngenuityFile(..., mydir = getwd(), eSet, filename = "IngenuityFile")

Arguments

...

a list of regressResult class

mydir

the directory where you would like to store the file

eSet

an ExpressionSet

filename

file name

Details

This function enable to create the ingenuity upload file based on a list of regressResult

Value

create an Ingenuity upload file

Author(s)

Xiwei Wu, Arthur Li

References

http://www.ingenuity.com/

Examples

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data(eSetExample)
design<- new("designMatrix", target=pData(eSetExample), covariates = "Treatment")
contrast<- new("contrastMatrix", design.matrix = design, 
    compare1 = "Treated", compare2 = "Control")
result<- regress(eSetExample, contrast)
## Not run: createIngenuityFile(result, eSet = eSetExample)

ArrayTools documentation built on May 2, 2018, 3:04 a.m.