proteoQC: An R package for proteomics data quality control

This package creates a HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

AuthorBo Wen <wenbo@genomics.cn>, Laurent Gatto <lg390@cam.ac.uk>
Date of publicationNone
MaintainerBo Wen <wenbo@genomics.cn>
LicenseLGPL-2
Version1.10.0

View on Bioconductor

Files in this package

proteoQC/DESCRIPTION
proteoQC/NAMESPACE
proteoQC/NEWS
proteoQC/R
proteoQC/R/ms12QC.R proteoQC/R/msQC.R proteoQC/R/report.R proteoQC/R/tools.R proteoQC/R/visualization.R
proteoQC/build
proteoQC/build/vignette.rds
proteoQC/inst
proteoQC/inst/config
proteoQC/inst/config/enzyme.txt
proteoQC/inst/config/mods.txt
proteoQC/inst/db
proteoQC/inst/db/crap.fasta
proteoQC/inst/db/crap.txt
proteoQC/inst/doc
proteoQC/inst/doc/proteoQC.R
proteoQC/inst/doc/proteoQC.Rnw
proteoQC/inst/doc/proteoQC.pdf
proteoQC/inst/extdata
proteoQC/inst/extdata/PXD000864-design.txt
proteoQC/inst/extdata/mgf.zip
proteoQC/inst/extdata/pep.zip
proteoQC/inst/extdata/qc.zip
proteoQC/inst/scripts
proteoQC/inst/scripts/make_big_qc.R
proteoQC/inst/scripts/skim.r
proteoQC/inst/tool
proteoQC/inst/tool/tandemparser.jar
proteoQC/inst/unitTests
proteoQC/inst/unitTests/test_loadmsQCres.R
proteoQC/man
proteoQC/man/addSummaryChart.Rd proteoQC/man/calcMSQCMetrics.Rd proteoQC/man/chargeStat.Rd proteoQC/man/cntStat.Rd proteoQC/man/combineRun.Rd proteoQC/man/createTargetDecoyDB.Rd proteoQC/man/getEnzyme.Rd proteoQC/man/getMods.Rd proteoQC/man/labelRatio.Rd proteoQC/man/loadmsQCres.Rd proteoQC/man/msQCpipe.Rd proteoQC/man/plotBioRepVenn.Rd proteoQC/man/plotFractionIDResult.Rd proteoQC/man/plotMS1Error.Rd proteoQC/man/plotMS2Error.Rd proteoQC/man/plotMS2Error_obsolete.Rd proteoQC/man/plotSampleIDResultErrorBar.Rd proteoQC/man/plotSampleVenn.Rd proteoQC/man/plotTechRepVenn.Rd proteoQC/man/print.msQCres.Rd proteoQC/man/proteinGroup.Rd proteoQC/man/reportHTML.Rd proteoQC/man/runTandem.Rd proteoQC/man/showEnzyme.Rd proteoQC/man/showMods.Rd
proteoQC/src
proteoQC/src/utilities.cpp
proteoQC/tests
proteoQC/tests/runTests.R
proteoQC/vignettes
proteoQC/vignettes/proteoQC.Rnw
proteoQC/vignettes/proteoQC.bib

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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