proteoQC: An R package for proteomics data quality control

This package creates a HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Install the latest version of this package by entering the following in R:
AuthorBo Wen <>, Laurent Gatto <>
Bioconductor views MassSpectrometry Proteomics QualityControl ReportWriting Visualization
Date of publicationNone
MaintainerBo Wen <>

View on Bioconductor


addSummaryChart Man page
calcMSQCMetrics Man page
chargeStat Man page
cntStat Man page
combineRun Man page
createTargetDecoyDB Man page
getEnzyme Man page
getMods Man page
labelRatio Man page
loadmsQCres Man page
msQCpipe Man page
plotBioRepVenn Man page
plotFractionIDResult Man page
plotMS1Error Man page
plotMS2Error Man page
plotMS2Error_obsolete Man page
plotSampleIDResultErrorBar Man page
plotSampleVenn Man page
plotTechRepVenn Man page
print.msQCres Man page
proteinGroup Man page
reportHTML Man page
runTandem Man page
showEnzyme Man page
showMods Man page

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