sapFinder
A package for variant peptides detection and visualization in shotgun proteomics.

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sapFinder: A package for variant peptides detection and visualization in shotgun proteomics.

sapFinder: A package for variant peptides detection and visualization in shotgun proteomics.

sapFinder is developed to automate (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics.

Getting started

sapFinder Vignette

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Vignettes Man pages API and functions Files

Package details
AuthorShaohang Xu, Bo Wen
Bioconductor views ImmunoOncology MassSpectrometry Proteomics RNASeq ReportWriting SNP Visualization
MaintainerShaohang Xu <xsh.skye@gmail.com>, Bo Wen <wenbo@genomics.cn>
LicenseGPL-2
Version1.28.0
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R: 
if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("sapFinder")

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sapFinder documentation built on Nov. 8, 2020, 5:59 p.m.

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