ampliQueso: Analysis of amplicon enrichment panels

The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq

AuthorAlicja Szabelska <alicja.szabelska@up.poznan.pl>; Marek Wiewiorka <marek.wiewiorka@gmail.com>; Michal Okoniewski <michal@fgcz.ethz.ch>
Date of publicationNone
MaintainerMichal Okoniewski <michal@fgcz.ethz.ch>
LicenseGPL-2
Version1.12.0

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Files

ampliQueso/DESCRIPTION
ampliQueso/NAMESPACE
ampliQueso/R
ampliQueso/R/auxFunctions.R ampliQueso/R/compareCoverages.R ampliQueso/R/compareCoveragesRegions.R ampliQueso/R/getCamelTests.R ampliQueso/R/getCountTable.R ampliQueso/R/getSNP.R ampliQueso/R/runAQReport.R
ampliQueso/build
ampliQueso/build/vignette.rds
ampliQueso/data
ampliQueso/data/ampliQueso.RData
ampliQueso/inst
ampliQueso/inst/NEWS
ampliQueso/inst/doc
ampliQueso/inst/doc/ampliQueso.R
ampliQueso/inst/doc/ampliQueso.Rnw
ampliQueso/inst/doc/ampliQueso.pdf
ampliQueso/inst/extdata
ampliQueso/inst/extdata/AQ.bed
ampliQueso/inst/extdata/covdesc
ampliQueso/inst/extdata/sample_033_sort.bam
ampliQueso/inst/extdata/sample_033_sort.bam.bai
ampliQueso/inst/extdata/sample_034_sort.bam
ampliQueso/inst/extdata/sample_034_sort.bam.bai
ampliQueso/inst/extdata/sample_035_sort.bam
ampliQueso/inst/extdata/sample_035_sort.bam.bai
ampliQueso/inst/extdata/sample_036_sort.bam
ampliQueso/inst/extdata/sample_036_sort.bam.bai
ampliQueso/inst/extdata/sample_043_sort.bam
ampliQueso/inst/extdata/sample_043_sort.bam.bai
ampliQueso/inst/extdata/sample_044_sort.bam
ampliQueso/inst/extdata/sample_044_sort.bam.bai
ampliQueso/inst/extdata/sample_045_sort.bam
ampliQueso/inst/extdata/sample_045_sort.bam.bai
ampliQueso/inst/extdata/sample_046_sort.bam
ampliQueso/inst/extdata/sample_046_sort.bam.bai
ampliQueso/inst/figure
ampliQueso/inst/figure/cheese-icon.png
ampliQueso/inst/reports
ampliQueso/inst/reports/aq_article.Rnw
ampliQueso/inst/reports/aq_beamer.Rnw
ampliQueso/inst/reports/aq_html.Rhtml
ampliQueso/man
ampliQueso/man/camelSampleTable.Rd ampliQueso/man/camelTest.Rd ampliQueso/man/compareCoverages.Rd ampliQueso/man/compareCoveragesReg.Rd ampliQueso/man/getCountTable.Rd ampliQueso/man/getSNP.Rd ampliQueso/man/ndMax.Rd ampliQueso/man/ndMin.Rd ampliQueso/man/runAQReport.Rd
ampliQueso/vignettes
ampliQueso/vignettes/ampliQueso.Rnw
ampliQueso/vignettes/fig1.png

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.