ndMax: ampliQueso sample data

In ampliQueso: Analysis of amplicon enrichment panels

Description

Nucleotide distribution object for a region with the largest camel measures difference between samples.

Usage

data(ampliQueso)

Format

The format is: Formal class 'NucleotideDistr' [package "rnaSeqMap"] with 13 slots ..@ chr : chr "chr1" ..@ start : num 1.93e+08 ..@ end : num 1.93e+08 ..@ strand : num 1 ..@ type : chr(0) ..@ data :List of 8 .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:68] 0 15 16 159 164 165 167 170 175 176 ... .. .. .. ..@ lengths : int [1:68] 11 10 1 1 2 2 1 3 1 2 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:45] 0 4 5 6 77 80 81 82 83 84 ... .. .. .. ..@ lengths : int [1:45] 11 7 3 1 1 2 1 8 3 1 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:78] 0 14 15 230 234 238 239 240 243 245 ... .. .. .. ..@ lengths : int [1:78] 11 10 1 1 2 1 1 1 3 2 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:49] 0 1 11 12 95 97 98 100 101 103 ... .. .. .. ..@ lengths : int [1:49] 10 1 10 1 3 1 2 7 1 2 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:64] 0 8 9 10 118 121 124 125 127 131 ... .. .. .. ..@ lengths : int [1:64] 11 5 4 2 1 2 1 1 1 1 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:37] 0 4 47 48 49 50 51 52 53 55 ... .. .. .. ..@ lengths : int [1:37] 11 11 1 3 10 2 6 1 1 1 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:77] 0 1 26 28 252 259 262 264 269 271 ... .. .. .. ..@ lengths : int [1:77] 10 1 10 1 1 2 1 2 2 1 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:71] 0 16 167 171 174 175 177 179 180 181 ... .. .. .. ..@ lengths : int [1:71] 11 11 1 2 1 2 1 2 1 3 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() ..@ assayData :<environment: 0x104fe810> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 0 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 0 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other : list() .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr(0) ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 0 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 3 .. .. .. ..$ : int [1:3] 3 0 1 .. .. .. ..$ : int [1:3] 2 20 1 .. .. .. ..$ : int [1:3] 1 3 0

Examples

data(ampliQueso)

ampliQueso documentation built on May 2, 2019, 12:45 a.m.