compareCoverages: compareCoverages - camel measure for a single comparison.

In ampliQueso: Analysis of amplicon enrichment panels

Description

Comparing coverage profiles with the camel measures for the two groups of BAM files, for a given genomic region.

Usage

compareCoverages(ch, st, en, group, t1, t2, measure="DA", covdesc="covdesc")

Arguments

ch	Chromosome of the region of interest
st	Start of the region of interest
en	End of the region of interest
group	Name of the attribute/group in the experimental description (i.e. covdesc)
t1	First name of the attribute used for grouping
t2	Another name of the attribute used for grouping
measure	Method of comparison for the coverages in the selected genomic region
covdesc	Covdesc-like data frame - BAM files are read from row names

Value

A single camel value with the results of comparison.

Author(s)

Alicja Szabelska, Marek Wiewiorka, Michal Okoniewski

ampliQueso documentation built on May 2, 2019, 12:45 a.m.