ndMin: ampliQueso sample data

In ampliQueso: Analysis of amplicon enrichment panels

Description

Nucleotide distribution object for a region with the lowest camel measures difference between samples.

Usage

data(ampliQueso)

Format

The format is: Formal class 'NucleotideDistr' [package "rnaSeqMap"] with 13 slots ..@ chr : chr "chr2" ..@ start : num 68615536 ..@ end : num 68620354 ..@ strand : num 1 ..@ type : chr(0) ..@ data :List of 8 .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:78] 0 1 47 48 49 54 500 503 504 505 ... .. .. .. ..@ lengths : int [1:78] 12 1 1 9 1 1 1 3 2 6 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:87] 0 2 61 786 787 788 790 793 795 796 ... .. .. .. ..@ lengths : int [1:87] 12 1 12 1 1 1 1 1 2 3 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:72] 0 1 48 49 50 52 506 508 511 513 ... .. .. .. ..@ lengths : int [1:72] 12 1 9 1 1 1 2 2 1 3 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:74] 0 60 62 63 65 738 741 743 746 748 ... .. .. .. ..@ lengths : int [1:74] 13 1 7 3 1 1 2 2 4 2 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:61] 0 20 23 513 516 517 518 519 520 521 ... .. .. .. ..@ lengths : int [1:61] 13 11 1 1 3 1 1 1 3 2 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:61] 0 19 21 437 438 440 441 442 444 445 ... .. .. .. ..@ lengths : int [1:61] 13 11 1 1 2 1 1 3 7 5 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:64] 0 1 36 37 466 467 468 469 470 472 ... .. .. .. ..@ lengths : int [1:64] 12 1 2 10 1 1 1 1 2 1 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() .. ..$ :Formal class 'Rle' [package "IRanges"] with 4 slots .. .. .. ..@ values : int [1:84] 0 1 51 52 53 54 725 726 728 729 ... .. .. .. ..@ lengths : int [1:84] 12 1 5 3 3 1 1 3 3 1 ... .. .. .. ..@ elementMetadata: NULL .. .. .. ..@ metadata : list() ..@ assayData :<environment: 0x104fc118> ..@ phenoData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 0 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ featureData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 0 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "featureNames" "featureColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ experimentData :Formal class 'MIAME' [package "Biobase"] with 13 slots .. .. ..@ name : chr "" .. .. ..@ lab : chr "" .. .. ..@ contact : chr "" .. .. ..@ title : chr "" .. .. ..@ abstract : chr "" .. .. ..@ url : chr "" .. .. ..@ pubMedIds : chr "" .. .. ..@ samples : list() .. .. ..@ hybridizations : list() .. .. ..@ normControls : list() .. .. ..@ preprocessing : list() .. .. ..@ other : list() .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 2 .. .. .. .. .. ..$ : int [1:3] 1 0 0 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ annotation : chr(0) ..@ protocolData :Formal class 'AnnotatedDataFrame' [package "Biobase"] with 4 slots .. .. ..@ varMetadata :'data.frame': 0 obs. of 1 variable: .. .. .. ..$ labelDescription: chr(0) .. .. ..@ data :'data.frame': 0 obs. of 0 variables .. .. ..@ dimLabels : chr [1:2] "sampleNames" "sampleColumns" .. .. ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. .. .. ..@ .Data:List of 1 .. .. .. .. .. ..$ : int [1:3] 1 1 0 ..@ .__classVersion__:Formal class 'Versions' [package "Biobase"] with 1 slots .. .. ..@ .Data:List of 3 .. .. .. ..$ : int [1:3] 3 0 1 .. .. .. ..$ : int [1:3] 2 20 1 .. .. .. ..$ : int [1:3] 1 3 0

Examples

data(ampliQueso)

ampliQueso documentation built on May 2, 2019, 12:45 a.m.