nmah/CellScore: Tool for Evaluation of Cell Identity from Transcription Profiles

The CellScore package contains functions to evaluate the cell identity of a test sample, given a cell transition defined with a starting (donor) cell type and a desired target cell type. The evaluation is based upon a scoring system, which uses a set of standard samples of known cell types, as the reference set. The functions have been carried out on a large set of microarray data from one platform (Affymetrix Human Genome U133 Plus 2.0). In principle, the method could be applied to any expression dataset, provided that there are a sufficient number of standard samples and that the data are normalized.

Getting started

Package details

Bioconductor views DataImport GeneExpression Microarray MultipleComparison ReportWriting Transcription Visualization
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
nmah/CellScore documentation built on May 4, 2023, 2:52 p.m.