nmah/CellScore: Tool for Evaluation of Cell Identity from Transcription Profiles

The CellScore package contains functions to evaluate the cell identity of a test sample, given a cell transition defined with a starting (donor) cell type and a desired target cell type. The evaluation is based upon a scoring system, which uses a set of standard samples of known cell types, as the reference set. The functions have been carried out on a large set of microarray data from one platform (Affymetrix Human Genome U133 Plus 2.0). In principle, the method could be applied to any expression dataset, provided that there are a sufficient number of standard samples and that the data are normalized.

Package details

AuthorNancy Mah, Katerina Taskova
Bioconductor views DataImport GeneExpression Microarray MultipleComparison ReportWriting Transcription Visualization
MaintainerNancy Mah <nancy.l.mah@googlemail.com>
LicenseGPL-3
Version0.99.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("nmah/CellScore")
nmah/CellScore documentation built on May 28, 2019, 3:12 p.m.