Biocview "ReproducibleResearch"

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

An ExperimentHub package for accessing processed RLSuite data sets

an R package for visualization of tree and annotation data

An R package to reproduce the analysis and figures presented in my master thesis

Cancer Dependency Map Data Package

Collection of publicly available imaging mass cytometry (IMC) datasets

Collection of spatially resolved omics datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Curated Metagenomic Data of the Human Microbiome

Curated Prostate Cancer Data

Data package for Multi-Omics Factor Analysis (MOFA)

Data package for phylogenetic profile analysis using PhyloProfile tool

Datasets for benchmarking in microbiome research

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Gene network modeling via TopNet reveals functional dependencies between diverse tumor-critical mediator genes

Integrating Multi-modal Single Cell Experiment datasets

MIGSA vignette data

NestLink an R data package to guide through Engineered Peptide Barcodes for In-Depth Analyzes of Binding Protein Ensembles

ORA, sigORA and GSEA functionalities for proteomic data

Processed Harmonized TCGA Data of Five Selected Cancer Types

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

Reproduce figures and simulations of OPWeight

Reproduce figures in IHW paper

R-side access to BioPlex protein-protein interaction data

Single-Cell Proteomics Data Package

Support package for the "Omics Data" course

This package contains tools and functions for preprocessing microbiome data

Tools and functions for preprocessing 16S and metagenomic sequencing microbiome data

Transcript Quantification Import with Automatic Metadata

Tuberculosis Gene Expression Data for Machine Learning

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Vectra Polaris and Vectra 3 multiplex single-cell imaging data