prebs: Probe region expression estimation for RNA-seq data for improved microarray comparability

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The prebs package aims at making RNA-sequencing (RNA-seq) data more comparable to microarray data. The comparability is achieved by summarizing sequencing-based expressions of probe regions using a modified version of RMA algorithm. The pipeline takes mapped reads in BAM format as an input and produces either gene expressions or original microarray probe set expressions as an output.

Author
Karolis Uziela and Antti Honkela
Date of publication
None
Maintainer
Karolis Uziela <karolis.uziela@scilifelab.se>
License
Artistic-2.0
Version
1.14.0

View on Bioconductor

Man pages

calc_prebs
Calculate PREBS values
prebs
PREBS package

Files in this package

prebs/DESCRIPTION
prebs/NAMESPACE
prebs/R
prebs/R/PREBS.R
prebs/build
prebs/build/vignette.rds
prebs/inst
prebs/inst/CITATION
prebs/inst/NEWS
prebs/inst/doc
prebs/inst/doc/prebs.R
prebs/inst/doc/prebs.Rnw
prebs/inst/doc/prebs.pdf
prebs/man
prebs/man/calc_prebs.Rd
prebs/man/prebs.Rd
prebs/vignettes
prebs/vignettes/my_references.bib
prebs/vignettes/prebs.Rnw