The prebs package aims at making RNA-sequencing (RNA-seq) data more comparable to microarray data. The comparability is achieved by summarizing sequencing-based expressions of probe regions using a modified version of RMA algorithm. The pipeline takes mapped reads in BAM format as an input and produces either gene expressions or original microarray probe set expressions as an output.
|Author||Karolis Uziela and Antti Honkela|
|Bioconductor views||GeneExpression ImmunoOncology Microarray Preprocessing RNASeq Sequencing|
|Maintainer||Karolis Uziela <[email protected]>|
|Package repository||View on Bioconductor|
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