prebs: PREBS package
In prebs: Probe region expression estimation for RNA-seq data for improved microarray comparability
Description
The prebs package aims at making RNA-sequencing (RNA-seq)
data more comparable to microarray data. The comparability is achieved
by summarizing sequencing-based expressions of probe regions using
standard microarray summarization algorithms (RPA or RMA). The pipeline takes mapped reads
in BAM format as an input and produces either gene expressions or
original microarray probe set expressions as an output.
Details
The package has only one public function: calc_prebs.
Type help(calc_prebs) for more information on the usage.
prebs documentation built on Nov. 8, 2020, 5:40 p.m.
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Description
The prebs package aims at making RNA-sequencing (RNA-seq) data more comparable to microarray data. The comparability is achieved by summarizing sequencing-based expressions of probe regions using standard microarray summarization algorithms (RPA or RMA). The pipeline takes mapped reads in BAM format as an input and produces either gene expressions or original microarray probe set expressions as an output.
Details
The package has only one public function: calc_prebs.
Type help(calc_prebs) for more information on the usage.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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