affyPara: Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

AuthorMarkus Schmidberger <schmidb@ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo@gmx.net>, Ulrich Mansmann <mansmann@ibe.med.uni-muenchen.de>
Date of publicationNone
MaintainerMarkus Schmidberger <MSchmidberger@freenet.de>
LicenseGPL-3
Version1.34.0
http://www.ibe.med.uni-muenchen.de

View on Bioconductor

Functions

bgCorrectPara Man page
boxplotPara Man page
class:vsnInputPara Man page
combineMatrices Man page
computeExprSetPara Man page
dim,vsnInputPara-method Man page
distributeFiles Man page
justvsnPara Man page
makeCluster Man page
MAplotPara Man page
MAplotSer Man page
mergeAffyBatches Man page
ncol,vsnInputPara-method Man page
normalizeAffyBatchConstantPara Man page
normalizeAffyBatchInvariantsetPara Man page
normalizeAffyBatchLoessIterPara Man page
normalizeAffyBatchLoessPara Man page
normalizeAffyBatchQuantilesPara Man page
normalizeQuantilesPara Man page
nrow,vsnInputPara-method Man page
preproPara Man page
read.affybatchPara Man page
removeDistributedFiles Man page
rmaPara Man page
splitAffyBatch Man page
splitFileVector Man page
splitMatrix Man page
stopCluster Man page
summaryM1M2Para Man page
vsn2Para Man page
vsnInputPara Man page
vsnInputPara-class Man page
vsnrmaPara Man page

Files

affyPara/DESCRIPTION
affyPara/NAMESPACE
affyPara/NEWS
affyPara/R
affyPara/R/MAplotPara.R affyPara/R/MAplotParaFunctions.R affyPara/R/MAplotSer.R affyPara/R/affyParaIntern.R affyPara/R/bgcPara.R affyPara/R/boxplotPara.R affyPara/R/boxplotParaFunctions.R affyPara/R/combine.R affyPara/R/computeExprSetPara.R affyPara/R/distributeFiles.R affyPara/R/normalizeConstantPara.R affyPara/R/normalizeInvariantsetPara.R affyPara/R/normalizeLoessIterPara.R affyPara/R/normalizeLoessPara.R affyPara/R/normalizeQuantilesPara.R affyPara/R/preproPara.R affyPara/R/qa.R affyPara/R/readAffybatchPara.R affyPara/R/removeDistributedFiles.R affyPara/R/rmaPara.R affyPara/R/snowReplace.R affyPara/R/split.R affyPara/R/vsnPara.R affyPara/R/vsnParaFunctions.R affyPara/R/zzz.R
affyPara/README
affyPara/build
affyPara/build/vignette.rds
affyPara/inst
affyPara/inst/doc
affyPara/inst/doc/affyPara.R
affyPara/inst/doc/affyPara.Rnw
affyPara/inst/doc/affyPara.pdf
affyPara/inst/doc/vsnStudy.R
affyPara/inst/doc/vsnStudy.Rnw
affyPara/inst/doc/vsnStudy.pdf
affyPara/man
affyPara/man/MAplotPara.Rd affyPara/man/bgcPara.Rd affyPara/man/boxplotPara.Rd affyPara/man/class.vsnInputPara.Rd affyPara/man/computeExprSetPara.Rd affyPara/man/distributeFiles.Rd affyPara/man/mergeSplitObjects.Rd affyPara/man/normalizeAffyBatchConstantPara.Rd affyPara/man/normalizeAffyBatchInvariantsetPara.Rd affyPara/man/normalizeAffyBatchLoessPara.Rd affyPara/man/normalizeAffyBatchLoessParaIter.Rd affyPara/man/normalizeAffyBatchQuantilesPara.Rd affyPara/man/preproPara.Rd affyPara/man/qa.Rd affyPara/man/readAffybatchPara.Rd affyPara/man/removeDistributedFiles.Rd affyPara/man/rmaPara.Rd affyPara/man/snowReplace.Rd affyPara/man/split.Rd affyPara/man/vsnPara.Rd
affyPara/vignettes
affyPara/vignettes/affyPara.Rnw
affyPara/vignettes/fig
affyPara/vignettes/fig/E-GEOD-11121
affyPara/vignettes/fig/E-GEOD-11121/vsnAddonBoxplots_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-11121/vsnAddon_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-11121/vsnSubsamplesBoxplot_25.pdf
affyPara/vignettes/fig/E-GEOD-11121/vsnSubsamples_25.pdf
affyPara/vignettes/fig/E-GEOD-12093
affyPara/vignettes/fig/E-GEOD-12093/vsnAddonBoxplots_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-12093/vsnAddon_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-12093/vsnSubsamplesBoxplot_50.pdf
affyPara/vignettes/fig/E-GEOD-12093/vsnSubsamples_50.pdf
affyPara/vignettes/fig/affyPara_speedup.pdf
affyPara/vignettes/references.bib
affyPara/vignettes/vsnStudy.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.