affyPara: Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays

The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.

AuthorMarkus Schmidberger <schmidb@ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo@gmx.net>, Ulrich Mansmann <mansmann@ibe.med.uni-muenchen.de>
Date of publicationNone
MaintainerMarkus Schmidberger <MSchmidberger@freenet.de>
LicenseGPL-3
Version1.34.0
http://www.ibe.med.uni-muenchen.de

View on Bioconductor

Files in this package

affyPara/DESCRIPTION
affyPara/NAMESPACE
affyPara/NEWS
affyPara/R
affyPara/R/MAplotPara.R affyPara/R/MAplotParaFunctions.R affyPara/R/MAplotSer.R affyPara/R/affyParaIntern.R affyPara/R/bgcPara.R affyPara/R/boxplotPara.R affyPara/R/boxplotParaFunctions.R affyPara/R/combine.R affyPara/R/computeExprSetPara.R affyPara/R/distributeFiles.R affyPara/R/normalizeConstantPara.R affyPara/R/normalizeInvariantsetPara.R affyPara/R/normalizeLoessIterPara.R affyPara/R/normalizeLoessPara.R affyPara/R/normalizeQuantilesPara.R affyPara/R/preproPara.R affyPara/R/qa.R affyPara/R/readAffybatchPara.R affyPara/R/removeDistributedFiles.R affyPara/R/rmaPara.R affyPara/R/snowReplace.R affyPara/R/split.R affyPara/R/vsnPara.R affyPara/R/vsnParaFunctions.R affyPara/R/zzz.R
affyPara/README
affyPara/build
affyPara/build/vignette.rds
affyPara/inst
affyPara/inst/doc
affyPara/inst/doc/affyPara.R
affyPara/inst/doc/affyPara.Rnw
affyPara/inst/doc/affyPara.pdf
affyPara/inst/doc/vsnStudy.R
affyPara/inst/doc/vsnStudy.Rnw
affyPara/inst/doc/vsnStudy.pdf
affyPara/man
affyPara/man/MAplotPara.Rd affyPara/man/bgcPara.Rd affyPara/man/boxplotPara.Rd affyPara/man/class.vsnInputPara.Rd affyPara/man/computeExprSetPara.Rd affyPara/man/distributeFiles.Rd affyPara/man/mergeSplitObjects.Rd affyPara/man/normalizeAffyBatchConstantPara.Rd affyPara/man/normalizeAffyBatchInvariantsetPara.Rd affyPara/man/normalizeAffyBatchLoessPara.Rd affyPara/man/normalizeAffyBatchLoessParaIter.Rd affyPara/man/normalizeAffyBatchQuantilesPara.Rd affyPara/man/preproPara.Rd affyPara/man/qa.Rd affyPara/man/readAffybatchPara.Rd affyPara/man/removeDistributedFiles.Rd affyPara/man/rmaPara.Rd affyPara/man/snowReplace.Rd affyPara/man/split.Rd affyPara/man/vsnPara.Rd
affyPara/vignettes
affyPara/vignettes/affyPara.Rnw
affyPara/vignettes/fig
affyPara/vignettes/fig/E-GEOD-11121
affyPara/vignettes/fig/E-GEOD-11121/vsnAddonBoxplots_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-11121/vsnAddon_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-11121/vsnSubsamplesBoxplot_25.pdf
affyPara/vignettes/fig/E-GEOD-11121/vsnSubsamples_25.pdf
affyPara/vignettes/fig/E-GEOD-12093
affyPara/vignettes/fig/E-GEOD-12093/vsnAddonBoxplots_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-12093/vsnAddon_20-40-60.pdf
affyPara/vignettes/fig/E-GEOD-12093/vsnSubsamplesBoxplot_50.pdf
affyPara/vignettes/fig/E-GEOD-12093/vsnSubsamples_50.pdf
affyPara/vignettes/fig/affyPara_speedup.pdf
affyPara/vignettes/references.bib
affyPara/vignettes/vsnStudy.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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