qrqc: Quick Read Quality Control

Quickly scans reads and gathers statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.

Package details

AuthorVince Buffalo
Bioconductor views DataImport Preprocessing QualityControl Sequencing Visualization
MaintainerVince Buffalo <vsbuffalo@ucdavis.edu>
LicenseGPL (>=2)
URL http://github.com/vsbuffalo/qrqc
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
if (!requireNamespace("BiocManager", quietly = TRUE))


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qrqc documentation built on Nov. 8, 2020, 7:03 p.m.