scale_color_iupac: Set the color scheme to 'biovizBase"s for IUPAC codes

Description Usage Author(s) See Also Examples

Description

This wraps ggplot2's scale_color_manual to use biovizBase's scheme IUPAC nucleotides codes.

Usage

1

Author(s)

Vince Buffalo <vsbuffalo@ucdavis.edu>

See Also

scale_color_dna, basePlot

Examples

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  ## Load a FASTQ file
  s.fastq <- readSeqFile(system.file('extdata', 'test.fastq', package='qrqc'))

  ## Plot qualities with the DNA color scheme
  ggplot(getBase(s.fastq)) + geom_line(aes(x=position, y=frequency,
    color=base)) + scale_color_iupac()


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