An object that inherits from class
base frequency data by position gathered by
is an accessor function that reshapes the base frequency data by position
into a data frame and calculates the proportions of each base per position.
This accessor function is useful if you want to map variables to
ggplot2 aesthetics. Base frequency be accessed
an S4 object that inherits from
a logical value indicating whether to drop bases that don't have any counts.
getBaseProp returns a
data.frame with columns:
the position in the read.
the proportion of a base found per position in the read.
signature(x = "SequenceSummary")
getBaseProp is an accessor function that works on any object read
readSeqFile; that is, objects that inherit from
Vince Buffalo <[email protected]>
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