API for qrqc
Quick Read Quality Control

Global functions
FASTASummary-class Man page
FASTQSummary-class Man page
SequenceSummary-class Man page
basePlot Man page
basePlot,SequenceSummary-method Man page
basePlot,list-method Man page
basePlot-methods Man page
calcKL Man page Source code
calcKL,SequenceSummary-method Man page
gcPlot Man page
gcPlot,SequenceSummary-method Man page
gcPlot,list-method Man page
gcPlot-methods Man page
generateReads Source code
geom_qlinerange Man page
getBase Man page
getBase,SequenceSummary-method Man page
getBase-methods Man page
getBaseProp Man page
getBaseProp,SequenceSummary-method Man page
getBaseProp-methods Man page
getGC Man page
getGC,SequenceSummary-method Man page
getGC-methods Man page
getKmer Man page
getKmer,SequenceSummary-method Man page
getKmer-methods Man page
getMCQual Man page
getMCQual,FASTQSummary-method Man page
getMCQual-methods Man page
getQual Man page
getQual,FASTQSummary-method Man page
getQual-methods Man page
getReportName Source code
getSeqlen Man page
getSeqlen,SequenceSummary-method Man page
getSeqlen-methods Man page
kmerEntropyPlot Man page
kmerEntropyPlot,SequenceSummary-method Man page
kmerEntropyPlot,list-method Man page
kmerEntropyPlot-methods Man page
kmerKLPlot Man page
kmerKLPlot,SequenceSummary-method Man page
kmerKLPlot,list-method Man page
kmerKLPlot-methods Man page
list2df Man page
makeHashTable Source code
makeReport Man page
makeReport,FASTASummary-method Man page
makeReport,FASTQSummary-method Man page
makeReport-methods Man page
makeReportDir Source code
plotBases Man page
plotBases,SequenceSummary-method Man page
plotBases-methods Man page
plotGC Man page
plotGC,SequenceSummary-method Man page
plotGC-methods Man page
plotQuals Man page
plotQuals,FASTQSummary-method Man page
plotQuals-methods Man page
plotSeqLengths Man page
plotSeqLengths,SequenceSummary-method Man page
plotSeqLengths-methods Man page
qualPlot Man page
qualPlot,FASTQSummary-method Man page
qualPlot,list-method Man page
qualPlot-methods Man page
readSeqFile Man page
scale_color_dna Man page
scale_color_iupac Man page
seqLengthRange Source code
seqlenPlot Man page
seqlenPlot,SequenceSummary-method Man page
seqlenPlot,list-method Man page
seqlenPlot-methods Man page
sortSequenceHash Source code
qrqc documentation built on Nov. 1, 2018, 2:24 a.m.