API for qrqc
Quick Read Quality Control
| Global functions | |
|---|---|
| FASTASummary-class | Man page |
| FASTQSummary-class | Man page |
| SequenceSummary-class | Man page |
| basePlot | Man page |
| basePlot,SequenceSummary-method | Man page |
| basePlot,list-method | Man page |
| basePlot-methods | Man page |
| calcKL | Man page Source code |
| calcKL,SequenceSummary-method | Man page |
| gcPlot | Man page |
| gcPlot,SequenceSummary-method | Man page |
| gcPlot,list-method | Man page |
| gcPlot-methods | Man page |
| generateReads | Source code |
| geom_qlinerange | Man page |
| getBase | Man page |
| getBase,SequenceSummary-method | Man page |
| getBase-methods | Man page |
| getBaseProp | Man page |
| getBaseProp,SequenceSummary-method | Man page |
| getBaseProp-methods | Man page |
| getGC | Man page |
| getGC,SequenceSummary-method | Man page |
| getGC-methods | Man page |
| getKmer | Man page |
| getKmer,SequenceSummary-method | Man page |
| getKmer-methods | Man page |
| getMCQual | Man page |
| getMCQual,FASTQSummary-method | Man page |
| getMCQual-methods | Man page |
| getQual | Man page |
| getQual,FASTQSummary-method | Man page |
| getQual-methods | Man page |
| getReportName | Source code Source code |
| getSeqlen | Man page |
| getSeqlen,SequenceSummary-method | Man page |
| getSeqlen-methods | Man page |
| kmerEntropyPlot | Man page |
| kmerEntropyPlot,SequenceSummary-method | Man page |
| kmerEntropyPlot,list-method | Man page |
| kmerEntropyPlot-methods | Man page |
| kmerKLPlot | Man page |
| kmerKLPlot,SequenceSummary-method | Man page |
| kmerKLPlot,list-method | Man page |
| kmerKLPlot-methods | Man page |
| list2df | Man page |
| makeHashTable | Source code |
| makeReport | Man page |
| makeReport,FASTASummary-method | Man page |
| makeReport,FASTQSummary-method | Man page |
| makeReport-methods | Man page |
| makeReportDir | Source code |
| plotBases | Man page |
| plotBases,SequenceSummary-method | Man page |
| plotBases-methods | Man page |
| plotGC | Man page |
| plotGC,SequenceSummary-method | Man page |
| plotGC-methods | Man page |
| plotQuals | Man page |
| plotQuals,FASTQSummary-method | Man page |
| plotQuals-methods | Man page |
| plotSeqLengths | Man page |
| plotSeqLengths,SequenceSummary-method | Man page |
| plotSeqLengths-methods | Man page |
| qualPlot | Man page |
| qualPlot,FASTQSummary-method | Man page |
| qualPlot,list-method | Man page |
| qualPlot-methods | Man page |
| readSeqFile | Man page |
| scale_color_dna | Man page |
| scale_color_iupac | Man page |
| seqLengthRange | Source code |
| seqlenPlot | Man page |
| seqlenPlot,SequenceSummary-method | Man page |
| seqlenPlot,list-method | Man page |
| seqlenPlot-methods | Man page |
| sortSequenceHash | Source code |
