Plot Bases by Position
plotBases plots the frequency or proportion of bases by
position in the read.
plotBases uses the Sanger base color scheme: blue is Cytosine,
green is Adenine, black is Guanine, red is Thymine, and purple in N
(any base). Other IUPAC nucleotides are colored using RColorBrewer.
an S4 object of class that inherits from
a character string that is either "freq" or "prop" indicating whether to plot frequencies or proportions on the y-axis.
a vector of characters indicating which bases to
include. The default value
a logical value indicating whether to include a legend on the top right.
Vince Buffalo <firstname.lastname@example.org>
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