focalCall: Detection of focal aberrations in DNA copy number data

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Detection of genomic focal aberrations in high-resolution DNA copy number data

Author
Oscar Krijgsman
Date of publication
None
Maintainer
Oscar Krijgsman <oscarkrijgsman@gmail.com>
License
GPL-2
Version
1.8.0
URLs

View on Bioconductor

Man pages

BierkensCNA
Cervical cancer arrayCGH data
focalCall
Detection genomic focal aberrations
FreqPlot
frequency plot copy number aberrations.
FreqPlotfocal
frequency plot focal copy number aberrations.
igvFiles
Match Ensembl genes to focal aberrations.
singleSample
Detection focal aberrations with 1 sample only

Files in this package

focalCall/DESCRIPTION
focalCall/NAMESPACE
focalCall/NEWS
focalCall/R
focalCall/R/FreqPlot.R
focalCall/R/FreqPlotfocal.R
focalCall/R/focalCall.R
focalCall/R/igvFiles.R
focalCall/R/private.R
focalCall/R/singleSample.R
focalCall/README.md
focalCall/build
focalCall/build/vignette.rds
focalCall/data
focalCall/data/BierkensCNA.RData
focalCall/inst
focalCall/inst/doc
focalCall/inst/doc/focalCall.R
focalCall/inst/doc/focalCall.Rnw
focalCall/inst/doc/focalCall.pdf
focalCall/inst/unitTests
focalCall/inst/unitTests/focalCall_unitTests.R
focalCall/man
focalCall/man/BierkensCNA.Rd
focalCall/man/FreqPlot.Rd
focalCall/man/FreqPlotfocal.Rd
focalCall/man/focalCall.Rd
focalCall/man/igvFiles.Rd
focalCall/man/singleSample.Rd
focalCall/tests
focalCall/tests/runTests.R
focalCall/vignettes
focalCall/vignettes/focalCall.Rnw
focalCall/vignettes/focalCall.bib