MiChip: MiChip Parsing and Summarizing Functions

This package takes the MiChip miRNA microarray .grp scanner output files and parses these out, providing summary and plotting functions to analyse MiChip hybridizations. A set of hybridizations is packaged into an ExpressionSet allowing it to be used by other BioConductor packages.

AuthorJonathon Blake <blake@embl.de>
Date of publicationNone
MaintainerJonathon Blake <blake@embl.de>
LicenseGPL (>= 2)
Version1.28.0

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Functions

boxplotData Man page
boxplotDataNoFile Man page
correctForFlags Man page
Introduction Man page
MiChip Man page
myForgivingMedian Man page
naOmitMedian Man page
normalizePerChipMedian Man page
outputAnnotatedDataMatrix Man page
panelCor Man page
parseRawData Man page
plotIntensitiesScatter Man page
removeUnwantedRows Man page
returnAnnotatedDataMatrix Man page
setIntensityCutoff Man page
standardRemoveRows Man page
summarizeIntensitiesAsMedian Man page
workedExampleMedianNormalize Man page
workedExampleNotNormalizedData Man page

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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