parseRawData: Parse raw data files to create an ExpressionSet

In MiChip: MiChip Parsing and Summarizing Functions

Description

Loads all the gpr scanner output files in a particular directory and returns an ExpressionSet of the hybridizations in a MiChip experiment

Usage

parseRawData(datadir=".", pat="gpr")

Arguments

datadir	a directory containing one or my files of scanner output from MiChip hybridizations
pat	a string containing the three letter extension of the scanner output files

Examples

## Not run: 
## Load all *.gpr files in current directory
parseRawData(datadir=".", pat="gpr")


## Load all *.gpr files in a specified directory , windows
parseRawData(datadir="c:\mydata\grpdata\expt1\", pat="gpr")


## Load all *.gpr files in a specified directory, linux
parseRawData(datadir="/home/myuser/gprdata/extp1/", pat="gpr")

## End(Not run)

MiChip documentation built on Nov. 8, 2020, 8:01 p.m.