correctForFlags: Corrects for spots flagged as not present

Description Usage Arguments Examples

View source: R/MiChip.R

Description

Spots flagged with a -ve quality flag value by the scanner may be regarded as not present. This method sets their intensity to NA.

Usage

1
correctForFlags(eset, intensityCutoff=0)

Arguments

eset

ExpressionSet containing intensity values and flags to be filtered

intensityCutoff

value of lowest acceptable intensity value in the experiment

Examples

1
2
3
4
5
#Correct ExpressionSet for flags of spots marked as unreadable
## Not run: 
myCorrectedEset <-correctForFlags(eset, intensityCutoff=0)

## End(Not run)

MiChip documentation built on May 31, 2017, 11:52 a.m.

Search within the MiChip package
Search all R packages, documentation and source code