correctForFlags: Corrects for spots flagged as not present
In MiChip: MiChip Parsing and Summarizing Functions
Description
Usage
Arguments
Examples
Description
Spots flagged with a -ve quality flag value by the scanner may be regarded as not present.
This method sets their intensity to NA.
Usage
1
correctForFlags(eset, intensityCutoff=0)
Arguments
eset
ExpressionSet containing intensity values and flags to be filtered
intensityCutoff
value of lowest acceptable intensity value in the experiment
Examples
1
2
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4
5
#Correct ExpressionSet for flags of spots marked as unreadable
## Not run:
myCorrectedEset <-correctForFlags(eset, intensityCutoff=0)
## End(Not run)
MiChip documentation built on Nov. 8, 2020, 8:01 p.m.
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Description Usage Arguments Examples
Description
Spots flagged with a -ve quality flag value by the scanner may be regarded as not present. This method sets their intensity to NA.
Usage
1 | correctForFlags(eset, intensityCutoff=0)
|
Arguments
eset |
|
intensityCutoff |
value of lowest acceptable intensity value in the experiment |
Examples
1 2 3 4 5 | #Correct ExpressionSet for flags of spots marked as unreadable
## Not run:
myCorrectedEset <-correctForFlags(eset, intensityCutoff=0)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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