removeUnwantedRows: Removes unwanted rows from data matrix

In MiChip: MiChip Parsing and Summarizing Functions

Description

Due to the requirements of spotting the chips, some of the spots are empty. Others contain controls or features from another species that may not be wanted in the analysis. This method removes them

Usage

removeUnwantedRows(rawData, filters)

Arguments

rawData	ExpressionSet containing matrix of data to be filtered
filters	list of strings to be to be filtered from annotation gene name column

Examples

#Removes empty and control spots from data matrix
## Not run: 
filters=c("empty", "control")
filteredData <- removeUnwantedRows(rawData, filters)
## End(Not run)

MiChip documentation built on Nov. 8, 2020, 8:01 p.m.