oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis

AuthorRaffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)
Date of publicationNone
MaintainerRaffaele A Calogero <raffaele.calogero@unito.it>
LicenseArtistic-2.0
Version1.40.0
http://www.bioinformatica.unito.it/oneChannelGUI/

View on Bioconductor

Man pages

adaptorTrimm: Trimming 3,5 end primers for miRNAs NGS

annotateNGSeset: Associate annotation to NGS data loaded in oneChannelGUI

AptMidas: Graphical interface to APT midas

bayseqInterface: graphical interface to baySeq library.

biomartFilter: Filtering only gene-level probe sets with multiple ensembl...

bofa: Bovine microRNA data set

bowtieBuilt: Downloading Bowtie prebuilt reference sets

bowtieDownload: Downloading Bowtie and Picard tools

bowtieGenomes: Downloading and building chromosome level genomes references...

buildingLocalAnnotation: Updates local gene-level annotation data for gene and exon...

chrLength: Chromosomes lenghts

colExtract: Extract a column from a tab delimited file with header

combineGeoMSF: This function allows to combine GEO Matrix Series Files...

combining2eSet: This function allows to combine two matrices extracted from...

consistentFilters: This function allows filtering using the combination of...

cosieWrapper: A wrapper to cosie, Corrected Splicing Indices for Exon...

createGeoTarget: Creating a affylmGUI Target starting from a GEO Matrix series...

crosshybFilter: Removing from exon array gene/exon level probe sets...

ctrtrtHeatmap: Creating heat map for maSigPro data with only one treatment...

desGenes: desGenes

dexCounts: dexCounts

dexExons: dexExons

dfMAplot: MA and Volcano plots from data present in a limma derived...

EDANtFreq: Plotting Nts frequency for mapped reads extracted from BAM...

EDAplotQuality: Plotting Quality scores for mapped reads extracted from BAM...

EDAreadNumber: Plotting the number of mapped reads extracted from BAM files

edgerInterface: graphical interface to edgeR library.

edgeRNorm: This function scale-normalize NGS raw data as described by...

EG2probeset: This function allows to link GeneBank and Entrez Gene ids to...

erankProdAltSpl: Implementation of the Rank Product method for the detection...

erankProdAltSplFilterl: Filtering Rank Product results for the detection of...

eSet4meV: This function allows to reformat an eSet to be loaded in meV...

exonContrasts: Defining t-test regularized p-values

exonScaffold: stand alone function to generate a scaffold containing only...

exonsSpecific2as: Defining the exons associated to the various alternative...

exonTopTableExtract: Extracts data on the basis of a defined t-test regularized...

extractAffyids: Extracting probe ids associated to a specific Gene Ontology...

extractmirTargets: Extract miRNA targets showing a opposite regulation with...

filteringmiRtargets: Subsetting an expression set using a list of gene which are...

filteringTable: Filtering a tab delimited file

geneExonLibs: Download the Library files for gene and exon analysis

genomePlot: This function plots average intensity signals for two group...

genomeStudioReformat: The present function reformat an expression file exported by...

geoVSbioc: linking GEO platforms to available BioC annotations libraries

getNGSannotation: Retrieving genome annotation from ENSEMBL

GOenrichment: Searching for Gene Ontology enriched terms within a set of...

hsfa: Human microRNA data set

inspecting.one.splice.index: Plotting on the profiles of splice indexes for a transcript...

inspecting.splice.index: Plotting on a pdf file the profiles of splice indexes

intensityFilter: intensity filtering with a mouse click

IPAlistFilter: Filtering an expression set using a set of Entrez genes...

iqrFilter: Interquantile filtering with a mouse click

limma2paired: graphical interface apply linear model to two sample groups...

limmaExons: graphical interface to limma for alternative splicing...

listFilter: Subsetting an expression set using a list of Affymetrix ids

makeBED15: This function creates files in BED15 format to be loaded on...

makeGCcontent: Building a list of gene-level GC frequencies

makeGeneScaffold: Building a GRange object at chromosome level on UCSC genome...

makeSam: makeSam

mapping2ensembl: Associating e-level probe sets to entrez gene exonic...

mapping2exon: This function maps on exon-level Probe Selection Region (PSR)...

mapping2RefSeq: This function maps on NCBI Reference sequences spliced exons...

masigpro: The function executes maSigPro analysis

masigpro.edesign: The function creates an edesign object needed to run maSigPro

masigpro.view: The function allows the visualization of maSigPro results

metaArrayIC: Graphical interface to metaArray Integrative Correlation...

miRNAbowtieRun: Primary mapping of short reads with Bowtie/Picard for miRNA

ML.edesign: The function creates an data frame containing the parameters...

mmfa: Mouse microRNA data set

mRNAbowtieRun: Primary mapping of short reads with Bowtie/Picard for...

mRNAmiRCor: Filtering by mean of correlation between expression data and...

myExpresso: Running the affy expresso function with the widget

ncHs.data: Subset of genomic regions with ncRNA of Homo sapiens

ncMm.data: Subset of genomic regions with ncRNA of Mus musculus

ncRn.data: Subset of genomic regions with ncRNA in Rattus norvegicus

ncScaffold: stand alone function to generate a scaffold containing only...

NGSreformat: reformating output of NGS primary tools software

normBoxplot: Box plot of the arrays data available in NormalizeAffyData...

ocPlotHist: Gene/Exon level density plots

ocPlotPCA: Gene/Exon level density plots

oneChannelGUI: Starting oneChannelGUI package

oneChannelGUI-package: Set of functions extending the capability of affylmGUI...

OpenLargefiles: This function loads large data set made from tab delimited...

OpenmRNABam: This function loads Bam files generated by local mapping with...

plierToZero: Setting to 0 low log2 intensity values generated with plier

plotGO: Plotting parents of a GO term with few mouse click

PlotOptionsv1: A modified version of the function used in affyPLM library

plotVariantSI: This function plots on UCSC genome browser data derived by...

qcMDS: This function plots the sample relations based on...

rankingConversion: This function transforms intensity data in normalized ranks

rankProd: graphical interface to rank product method implemented in...

rawBoxplotPN: Plotting raw log2 intensities from controls

rawpCheck: Raw p-value distribution from limma analysis by a mouse click

Reads2logos: Extracting info on the counts associated to a differentially...

refiningPeaks: This function refines the structure of the genomics peaks,...

reformatGdl: This function reorganizes single NGS data in a matrix to be...

refseqDownload: Retrieving Reference Sequences from NCBI ftp

retrieveMirTargets: graphical interface to RmiR.Hs.miRNA library.

retrievePSRseq: This function, given a file containing exon-level probesets...

retrievePSRseq1gid: This function, given a gene-level probeset id, retrieves...

reviqrFilter: Reverse interquantile filtering with a mouse click

RmiRInterface: graphical interface to RmiR library.

rnfa: Rat microRNA data set

runningJetta: graphical interface to MADS/jetta R library.

sample.size.evaluation: The function executes and plots results from ssize and delta...

sample.size.evaluation1: The function executes functions from the sizepower packahe

showDataset: Grabbing info about the available expression set

showTopTable: Modification of the function immplemented in affylmGUI to...

siggenes: The function executes SAM analysis implemented in siggenes...

simFilter: This function allows filtering on the basis of the average...

spliceIndex: This function coverts the exon intenisty data in a slice...

standAloneAddingAnnotation: Attach to a data frame containing gene-level data derived...

standAloneBuildingLocalAnnotation: Creates a data frame with gene-level annotation data for exon...

targetWidget: Widget to create a target file to load .CEL files

templA: Generating a template A to be uploaded in Ingenuity Pathways...

tophat: TuxedoSuite

topTable.exons: topTable.exons

trainTest: Creating a training set and a test set by a mouse click

tuxedoSetup: tuxedoSetup

updateLibs: This function allows to update the present installation of...

variantExons: This function is used to generate a table containing...

variantSI: This function allows filtering on the basis of variant exons

VennDiagram: Venn diagrams using two or three lists

wrapNGS: Downloading software for NGS

wrapScaffold: A wrapper for makeGCcontent, makeGeneScaffold

Functions

AboutaffylmGUI Man page
AboutextendedaffylmGUI Man page
adaptorTrimm Man page
addAnnLib Man page
addga Man page
affyPLMHelp Man page
affyPlotMA Man page
annotateNGSeset Man page
.annotation Man page
aptFolder Man page
AptMidas Man page
bayseqInterface Man page
biomartFilter Man page
bofa Man page
bowtieBuilt Man page
bowtieDownload Man page
bowtieGenomes Man page
buildingLocalAnnotation Man page
cdsDiff Man page
changeMenu Man page
changes Man page
chimeraseq Man page
chooseEDir Man page
chooseInDir Man page
chooseOutDir Man page
chrLength Man page
closePdf Man page
colExtract Man page
combineGeoMSF Man page
combining2eSet Man page
ComputeContrasts Man page
ComputeLinearModelFit Man page
consistentFilters Man page
cosieWrapper Man page
createDir Man page
createGeoTarget Man page
crosshybFilter Man page
ctrtrtHeatmap Man page
cuffdiff Man page
cufflinks Man page
cuffmerge Man page
dabgFilter Man page
deleteLocalData Man page
delete.ML Man page
desCounts Man page
deseq2Processing Man page
DESeqInterface Man page
desGenes Man page
dexCounts Man page
dexExons Man page
dfMAplot Man page
downloadShrimp Man page
EDAbetweenLane Man page
EDAbiasPlot Man page
EDAboxplot Man page
EDANtFreq Man page
EDAplotQuality Man page
EDAreadNumber Man page
EDAwithinLane Man page
edgerInterface Man page
edgeRNorm Man page
EG2probeset Man page
enrich Man page
erankProdAltSpl Man page
erankProdAltSplFilter Man page
eSet4meV Man page
exonContrasts Man page
exonScaffold Man page
exonsSpecific2as Man page
exonTopTableExtract Man page
exportFASTA Man page
ExportfeatureNames Man page
ExportNormalizedExpressionValues Man page
ExportNormalizedExpressionValues1 Man page
extPckInfo Man page
extractAffyids Man page
extractmirTargets Man page
fastQC Man page
filteringmiRtargets Man page
filteringTable Man page
fusionfilter Man page
fusionNS Man page
fusionpeptides Man page
geneDiff Man page
geneExonLibs Man page
genefilterHelp Man page
genomePlot Man page
genomeStudioReformat Man page
geoVSbioc Man page
getNGSannotation Man page
GetNormalizationMethod Man page
GOenrichment Man page
goseqInterface Man page
GOstatsHelp Man page
hsfa Man page
importfusions Man page
initialize.extAffylmGUI Man page
inspecting.one.splice.index Man page
inspecting.splice.index Man page
intensityFilter Man page
intronicBg Man page
IPAlistFilter Man page
iqrFilter Man page
isoDiff Man page
javaFolder Man page
largedatasetNorm Man page
libraryFilesDir Man page
limma2paired Man page
limmaExons Man page
listFilter Man page
loadmirnapath Man page
log2Conversion Man page
makeBED15 Man page
makeGCcontent Man page
makeGeneScaffold Man page
makeSam Man page
mapping2ensembl Man page
mapping2exon Man page
mapping2RefSeq Man page
masigpro Man page
masigpro.edesign Man page
maSigProHelp Man page
masigpro.view Man page
metaArrayIC Man page
meVDownload Man page
midasFilter Man page
miRNAbowtieRun Man page
miRNAde Man page
mirnaTable Man page
mirPath Man page
ML.edesign Man page
mmfa Man page
mRNAbowtieRun Man page
mRNAmiRCor Man page
myExpresso Man page
.myfindOverlaps Man page
.myrk Man page
ncHs.data Man page
ncMm.data Man page
ncRn.data Man page
ncScaffold Man page
NewLimmaFile Man page
NewLimmaFileNGS Man page
ngsperlDownload Man page
NGSreformat Man page
NormalizeNow Man page
normBoxplot Man page
ocPlotHist Man page
ocPlotPCA Man page
oneChannelGUI Man page
oneChannelGUIHelp Man page
oneChannelGUIHelp Man page
oneChannelGUI-package Man page
oneChannelGUI.start Man page
OpenAFile Man page
OpenAGeoFile Man page
OpenALimmaFile Man page
OpenCDFandTargetsfiles Man page
OpenExonandTargetsfiles Man page
OpenExonFile Man page
OpenExonProbeFile Man page
OpenGeoFile Man page
OpenGeoFiles Man page
OpenLargeFile Man page
OpenLargefiles Man page
OpenLimmaFile Man page
OpenmiRanalyserfiles Man page
OpenmiRBam Man page
OpenmiRExpress Man page
OpenmiRProfiles Man page
OpenmiRShrimp Man page
OpenmRNABam Man page
OpenNgsfiles Man page
openPdf Man page
pamrHelp Man page
pdmclassHelp Man page
permuting Man page
plierToZero Man page
plotcoverage Man page
plotDE.exons Man page
plotGO Man page
PlotOptionsv1 Man page
plotVariantSI Man page
qcMDS Man page
rankingConversion Man page
rankProd Man page
RankProdHelp Man page
rawBoxplotPN Man page
rawpCheck Man page
Reads2logos Man page
recoverUnfiltered Man page
refiningPeaks Man page
reformatGdl Man page
refseqDownload Man page
retrieveMirTargets Man page
retrievePSRseq Man page
retrievePSRseq1gid Man page
reviqrFilter Man page
RmiRInterface Man page
rnfa Man page
runEnrichment Man page
runningJetta Man page
sample.size.evaluation Man page
sample.size.evaluation1 Man page
SaveAsLimmaFile Man page
SaveLimmaFile Man page
setBinDir Man page
SetED Man page
showDataset Man page
showTopTable Man page
siggenes Man page
siggenesHelp Man page
simFilter Man page
sizepowerHelp Man page
spliceIndex Man page
ssizeHelp Man page
standAloneAddingAnnotation Man page
standAloneBuildingLocalAnnotation Man page
startmeV Man page
targetWidget Man page
templA Man page
tophat Man page
tophatrun Man page
topTable.exons Man page
topTable.genes Man page
trainTest Man page
tuxedoMenu Man page
tuxedoSetup Man page
updateLibs Man page
variantExons Man page
variantSI Man page
VennDiagram Man page
whichKindOfArray Man page
wrapNGS Man page
wrapperMirnaCounts Man page
wrapScaffold Man page

Files

oneChannelGUI/DESCRIPTION
oneChannelGUI/NAMESPACE
oneChannelGUI/NEWS
oneChannelGUI/R
oneChannelGUI/R/RNAseq.R oneChannelGUI/R/chimeraGUI.R oneChannelGUI/R/classificationmenu.R oneChannelGUI/R/dataminingmenu.R oneChannelGUI/R/dexseq.R
oneChannelGUI/R/exonmenu.R
oneChannelGUI/R/filemenu.R oneChannelGUI/R/filteringmenu.R oneChannelGUI/R/generaltoolsmenu.R oneChannelGUI/R/helpmenu.R oneChannelGUI/R/initialize.extAffylmGUI.R oneChannelGUI/R/modellingstatmenu.R oneChannelGUI/R/normalizemenu.R oneChannelGUI/R/oneChannelGUI.R oneChannelGUI/R/oneChannelGUI.start.R oneChannelGUI/R/permutationstatmenu.R
oneChannelGUI/R/qcmenu.R
oneChannelGUI/R/reformatmenu.R oneChannelGUI/R/standalonefunctions.R oneChannelGUI/R/targetmenu.R oneChannelGUI/R/tuxedo.R oneChannelGUI/R/zzz.R
oneChannelGUI/build
oneChannelGUI/build/vignette.rds
oneChannelGUI/data
oneChannelGUI/data/bofa.rda
oneChannelGUI/data/chrLength.rda
oneChannelGUI/data/geoVSbioc.rda
oneChannelGUI/data/hsfa.rda
oneChannelGUI/data/mmfa.rda
oneChannelGUI/data/ncHs.data.rda
oneChannelGUI/data/ncMm.data.rda
oneChannelGUI/data/ncRn.data.rda
oneChannelGUI/data/rnfa.rda
oneChannelGUI/inst
oneChannelGUI/inst/CITATION
oneChannelGUI/inst/batch
oneChannelGUI/inst/batch/batch_dexseq_exon.R
oneChannelGUI/inst/doc
oneChannelGUI/inst/doc/Exon-level.analysis.Rnw
oneChannelGUI/inst/doc/Exon-level.analysis.pdf
oneChannelGUI/inst/doc/RNAseq.Rnw
oneChannelGUI/inst/doc/RNAseq.pdf
oneChannelGUI/inst/doc/gene-level.analysis.Rnw
oneChannelGUI/inst/doc/gene-level.analysis.pdf
oneChannelGUI/inst/doc/install.R
oneChannelGUI/inst/doc/install.Rnw
oneChannelGUI/inst/doc/install.pdf
oneChannelGUI/inst/doc/standAloneFunctions.Rnw
oneChannelGUI/inst/doc/standAloneFunctions.pdf
oneChannelGUI/inst/etc
oneChannelGUI/inst/etc/affylmGUI-menus.affy.txt
oneChannelGUI/inst/etc/affylmGUI-menus.exon.txt
oneChannelGUI/inst/etc/affylmGUI-menus.gene.txt
oneChannelGUI/inst/etc/affylmGUI-menus.illumina.txt
oneChannelGUI/inst/etc/affylmGUI-menus.large.datasets.txt
oneChannelGUI/inst/etc/affylmGUI-menus.ngs.datasets.txt
oneChannelGUI/inst/etc/localData.txt
oneChannelGUI/inst/etc/netaffxUpdates.txt
oneChannelGUI/inst/perl_scripts
oneChannelGUI/inst/perl_scripts/Adapter_trimCRA.pl
oneChannelGUI/inst/perl_scripts/MicroRazerSENSEMBL2genominator.hs.pl
oneChannelGUI/inst/perl_scripts/README.txt
oneChannelGUI/inst/perl_scripts/bta_precursor.fa
oneChannelGUI/inst/perl_scripts/fastq_to_fasta.pl
oneChannelGUI/inst/perl_scripts/hsa_precursor.fa
oneChannelGUI/inst/perl_scripts/mmu_precursor.fa
oneChannelGUI/inst/perl_scripts/rno_precursor.fa
oneChannelGUI/inst/perl_scripts/shrimp2bed.mm.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.hs.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.mirbase.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.mm.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.nc.pl
oneChannelGUI/man
oneChannelGUI/man/AptMidas.Rd oneChannelGUI/man/EDANtFreq.Rd oneChannelGUI/man/EDAplotQuality.Rd oneChannelGUI/man/EDAreadNumber.Rd oneChannelGUI/man/EG2probeset.Rd oneChannelGUI/man/GOenrichment.Rd oneChannelGUI/man/IPAlistFilter.Rd oneChannelGUI/man/ML.edesign.Rd oneChannelGUI/man/NGSreformat.Rd
oneChannelGUI/man/OpenBeadStudioFiles.rd
oneChannelGUI/man/OpenLargefiles.Rd oneChannelGUI/man/OpenmRNABam.Rd oneChannelGUI/man/PlotOptionsv1.Rd oneChannelGUI/man/Reads2logos.Rd oneChannelGUI/man/RmiRInterface.Rd oneChannelGUI/man/VennDiagram.Rd oneChannelGUI/man/adaptorTrimm.Rd oneChannelGUI/man/annotateNGSeset.Rd oneChannelGUI/man/bayseqInterface.Rd oneChannelGUI/man/biomartFilter.Rd oneChannelGUI/man/bofa.Rd oneChannelGUI/man/bowtieBuilt.Rd oneChannelGUI/man/bowtieDownload.Rd oneChannelGUI/man/bowtieGenomes.Rd oneChannelGUI/man/buildingLocalAnnotation.Rd oneChannelGUI/man/chrLength.Rd oneChannelGUI/man/colExtract.Rd oneChannelGUI/man/combineGeoMSF.Rd oneChannelGUI/man/combining2eSet.Rd oneChannelGUI/man/consistentFilters.Rd oneChannelGUI/man/cosieWrapper.Rd oneChannelGUI/man/createGeoTarget.Rd oneChannelGUI/man/crosshybFilter.Rd oneChannelGUI/man/ctrtrtHeatmap.Rd oneChannelGUI/man/desGenes.Rd oneChannelGUI/man/dexCounts.Rd oneChannelGUI/man/dexExons.Rd oneChannelGUI/man/dfMAplot.Rd oneChannelGUI/man/eSet4meV.Rd oneChannelGUI/man/edgeRNorm.Rd oneChannelGUI/man/edgerInterface.Rd oneChannelGUI/man/erankProdAltSpl.Rd oneChannelGUI/man/erankProdAltSplFilterl.Rd oneChannelGUI/man/exonContrasts.Rd oneChannelGUI/man/exonScaffold.Rd oneChannelGUI/man/exonTopTableExtract.Rd oneChannelGUI/man/exonsSpecific2as.Rd oneChannelGUI/man/extractAffyids.Rd oneChannelGUI/man/extractmirTargets.Rd oneChannelGUI/man/filteringTable.Rd oneChannelGUI/man/filteringmiRtargets.Rd oneChannelGUI/man/geneExonLibs.Rd oneChannelGUI/man/genomePlot.Rd oneChannelGUI/man/genomeStudioReformat.Rd oneChannelGUI/man/geoVSbioc.Rd oneChannelGUI/man/getNGSannotation.Rd oneChannelGUI/man/hsfa.Rd oneChannelGUI/man/inspecting.one.splice.index.Rd oneChannelGUI/man/inspecting.splice.index.Rd oneChannelGUI/man/intensityFilter.Rd oneChannelGUI/man/iqrFilter.Rd oneChannelGUI/man/limma2paired.Rd oneChannelGUI/man/limmaExons.Rd oneChannelGUI/man/listFilter.Rd oneChannelGUI/man/mRNAbowtieRun.Rd oneChannelGUI/man/mRNAmiRCor.Rd oneChannelGUI/man/makeBED15.Rd oneChannelGUI/man/makeGCcontent.Rd oneChannelGUI/man/makeGeneScaffold.Rd oneChannelGUI/man/makeSam.Rd oneChannelGUI/man/mapping2RefSeq.Rd oneChannelGUI/man/mapping2ensembl.Rd oneChannelGUI/man/mapping2exon.Rd oneChannelGUI/man/masigpro.Rd oneChannelGUI/man/masigpro.edesign.Rd oneChannelGUI/man/masigpro.view.Rd oneChannelGUI/man/metaArrayIC.Rd
oneChannelGUI/man/metaArrayMerge.rd
oneChannelGUI/man/miRNAbowtieRun.Rd oneChannelGUI/man/mmfa.Rd oneChannelGUI/man/myExpresso.Rd oneChannelGUI/man/ncHs.data.Rd oneChannelGUI/man/ncMm.data.Rd oneChannelGUI/man/ncRn.data.Rd oneChannelGUI/man/ncScaffold.Rd oneChannelGUI/man/normBoxplot.Rd oneChannelGUI/man/ocPlotHist.Rd oneChannelGUI/man/ocPlotPCA.Rd oneChannelGUI/man/oneChannelGUI-package.Rd oneChannelGUI/man/oneChannelGUI.Rd oneChannelGUI/man/plierToZero.Rd oneChannelGUI/man/plotGO.Rd oneChannelGUI/man/plotVariantSI.Rd oneChannelGUI/man/qcMDS.Rd oneChannelGUI/man/rankProd.Rd oneChannelGUI/man/rankingConversion.Rd oneChannelGUI/man/rawBoxplotPN.Rd oneChannelGUI/man/rawpCheck.Rd oneChannelGUI/man/refiningPeaks.Rd oneChannelGUI/man/reformatGdl.Rd oneChannelGUI/man/refseqDownload.Rd oneChannelGUI/man/retrieveMirTargets.Rd oneChannelGUI/man/retrievePSRseq.Rd oneChannelGUI/man/retrievePSRseq1gid.Rd oneChannelGUI/man/reviqrFilter.Rd oneChannelGUI/man/rnfa.Rd oneChannelGUI/man/runningJetta.Rd oneChannelGUI/man/sample.size.evaluation.Rd oneChannelGUI/man/sample.size.evaluation1.Rd oneChannelGUI/man/showDataset.Rd oneChannelGUI/man/showTopTable.Rd oneChannelGUI/man/siggenes.Rd oneChannelGUI/man/simFilter.Rd oneChannelGUI/man/spliceIndex.Rd oneChannelGUI/man/standAloneAddingAnnotation.Rd oneChannelGUI/man/standAloneBuildingLocalAnnotation.Rd oneChannelGUI/man/targetWidget.Rd oneChannelGUI/man/templA.Rd oneChannelGUI/man/topTable.exons.Rd oneChannelGUI/man/tophat.Rd oneChannelGUI/man/trainTest.Rd oneChannelGUI/man/tuxedoSetup.Rd oneChannelGUI/man/updateLibs.Rd oneChannelGUI/man/variantExons.Rd oneChannelGUI/man/variantSI.Rd oneChannelGUI/man/wrapNGS.Rd oneChannelGUI/man/wrapScaffold.Rd
oneChannelGUI/vignettes
oneChannelGUI/vignettes/Exon-level.analysis.Rnw
oneChannelGUI/vignettes/RNAseq.Rnw
oneChannelGUI/vignettes/fig1.png
oneChannelGUI/vignettes/fig2.png
oneChannelGUI/vignettes/fig3.png
oneChannelGUI/vignettes/fig4.png
oneChannelGUI/vignettes/fig5.png
oneChannelGUI/vignettes/fig6.png
oneChannelGUI/vignettes/fig7.png
oneChannelGUI/vignettes/fig8.png
oneChannelGUI/vignettes/fig9.png
oneChannelGUI/vignettes/fignew1.png
oneChannelGUI/vignettes/fignew10.png
oneChannelGUI/vignettes/fignew11.png
oneChannelGUI/vignettes/fignew12.png
oneChannelGUI/vignettes/fignew13.png
oneChannelGUI/vignettes/fignew14.png
oneChannelGUI/vignettes/fignew15.png
oneChannelGUI/vignettes/fignew16.png
oneChannelGUI/vignettes/fignew17.png
oneChannelGUI/vignettes/fignew18.png
oneChannelGUI/vignettes/fignew19.png
oneChannelGUI/vignettes/fignew2.png
oneChannelGUI/vignettes/fignew20.png
oneChannelGUI/vignettes/fignew21.png
oneChannelGUI/vignettes/fignew22.png
oneChannelGUI/vignettes/fignew23.png
oneChannelGUI/vignettes/fignew24.png
oneChannelGUI/vignettes/fignew25.png
oneChannelGUI/vignettes/fignew26.png
oneChannelGUI/vignettes/fignew27.png
oneChannelGUI/vignettes/fignew28.png
oneChannelGUI/vignettes/fignew29.png
oneChannelGUI/vignettes/fignew3.png
oneChannelGUI/vignettes/fignew30.png
oneChannelGUI/vignettes/fignew31.png
oneChannelGUI/vignettes/fignew32.png
oneChannelGUI/vignettes/fignew33.png
oneChannelGUI/vignettes/fignew34.png
oneChannelGUI/vignettes/fignew35.png
oneChannelGUI/vignettes/fignew36.png
oneChannelGUI/vignettes/fignew37.png
oneChannelGUI/vignettes/fignew38.png
oneChannelGUI/vignettes/fignew39.png
oneChannelGUI/vignettes/fignew4.png
oneChannelGUI/vignettes/fignew40.png
oneChannelGUI/vignettes/fignew41.png
oneChannelGUI/vignettes/fignew42.pdf
oneChannelGUI/vignettes/fignew43.png
oneChannelGUI/vignettes/fignew44.png
oneChannelGUI/vignettes/fignew45.png
oneChannelGUI/vignettes/fignew46.png
oneChannelGUI/vignettes/fignew47.png
oneChannelGUI/vignettes/fignew48.png
oneChannelGUI/vignettes/fignew49.png
oneChannelGUI/vignettes/fignew5.png
oneChannelGUI/vignettes/fignew50.png
oneChannelGUI/vignettes/fignew51.png
oneChannelGUI/vignettes/fignew52.png
oneChannelGUI/vignettes/fignew53.png
oneChannelGUI/vignettes/fignew54.png
oneChannelGUI/vignettes/fignew55.png
oneChannelGUI/vignettes/fignew56.png
oneChannelGUI/vignettes/fignew57.png
oneChannelGUI/vignettes/fignew58.png
oneChannelGUI/vignettes/fignew59.png
oneChannelGUI/vignettes/fignew6.png
oneChannelGUI/vignettes/fignew60.png
oneChannelGUI/vignettes/fignew61.png
oneChannelGUI/vignettes/fignew62.png
oneChannelGUI/vignettes/fignew63.png
oneChannelGUI/vignettes/fignew64.png
oneChannelGUI/vignettes/fignew65.png
oneChannelGUI/vignettes/fignew66.png
oneChannelGUI/vignettes/fignew67.png
oneChannelGUI/vignettes/fignew68.png
oneChannelGUI/vignettes/fignew69.png
oneChannelGUI/vignettes/fignew7.png
oneChannelGUI/vignettes/fignew70.png
oneChannelGUI/vignettes/fignew71.png
oneChannelGUI/vignettes/fignew72.png
oneChannelGUI/vignettes/fignew73.png
oneChannelGUI/vignettes/fignew74.png
oneChannelGUI/vignettes/fignew75.png
oneChannelGUI/vignettes/fignew76.png
oneChannelGUI/vignettes/fignew77.png
oneChannelGUI/vignettes/fignew78.png
oneChannelGUI/vignettes/fignew79.png
oneChannelGUI/vignettes/fignew8.png
oneChannelGUI/vignettes/fignew80.png
oneChannelGUI/vignettes/fignew81.png
oneChannelGUI/vignettes/fignew82.png
oneChannelGUI/vignettes/fignew83.png
oneChannelGUI/vignettes/fignew84.png
oneChannelGUI/vignettes/fignew85.png
oneChannelGUI/vignettes/fignew86.png
oneChannelGUI/vignettes/fignew9.png
oneChannelGUI/vignettes/gene-level.analysis.Rnw
oneChannelGUI/vignettes/inst1.png
oneChannelGUI/vignettes/install.Rnw
oneChannelGUI/vignettes/ngs0.png
oneChannelGUI/vignettes/ngs1.png
oneChannelGUI/vignettes/ngs10.png
oneChannelGUI/vignettes/ngs11.png
oneChannelGUI/vignettes/ngs12.png
oneChannelGUI/vignettes/ngs13.png
oneChannelGUI/vignettes/ngs14.png
oneChannelGUI/vignettes/ngs15.png
oneChannelGUI/vignettes/ngs16.png
oneChannelGUI/vignettes/ngs2.png
oneChannelGUI/vignettes/ngs3.png
oneChannelGUI/vignettes/ngs4.png
oneChannelGUI/vignettes/ngs5.png
oneChannelGUI/vignettes/ngs6.png
oneChannelGUI/vignettes/ngs7.png
oneChannelGUI/vignettes/ngs8.png
oneChannelGUI/vignettes/ngs9.png
oneChannelGUI/vignettes/standAloneFunctions.Rnw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.