oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

Share:

This package was developed to simplify the use of Bioconductor tools for beginners having limited or no experience in writing R code. This library provides a graphical interface for microarray gene and exon level analysis as well as miRNA/mRNA-seq data analysis

Author
Raffale A Calogero, Bioinformatics and Genomics Unit, Molecular Biotechnology Center, Torino (Italy)
Date of publication
None
Maintainer
Raffaele A Calogero <raffaele.calogero@unito.it>
License
Artistic-2.0
Version
1.40.0
URLs

View on Bioconductor

Man pages

adaptorTrimm
Trimming 3,5 end primers for miRNAs NGS
annotateNGSeset
Associate annotation to NGS data loaded in oneChannelGUI
AptMidas
Graphical interface to APT midas
bayseqInterface
graphical interface to baySeq library.
biomartFilter
Filtering only gene-level probe sets with multiple ensembl...
bofa
Bovine microRNA data set
bowtieBuilt
Downloading Bowtie prebuilt reference sets
bowtieDownload
Downloading Bowtie and Picard tools
bowtieGenomes
Downloading and building chromosome level genomes references...
buildingLocalAnnotation
Updates local gene-level annotation data for gene and exon...
chrLength
Chromosomes lenghts
colExtract
Extract a column from a tab delimited file with header
combineGeoMSF
This function allows to combine GEO Matrix Series Files...
combining2eSet
This function allows to combine two matrices extracted from...
consistentFilters
This function allows filtering using the combination of...
cosieWrapper
A wrapper to cosie, Corrected Splicing Indices for Exon...
createGeoTarget
Creating a affylmGUI Target starting from a GEO Matrix series...
crosshybFilter
Removing from exon array gene/exon level probe sets...
ctrtrtHeatmap
Creating heat map for maSigPro data with only one treatment...
desGenes
desGenes
dexCounts
dexCounts
dexExons
dexExons
dfMAplot
MA and Volcano plots from data present in a limma derived...
EDANtFreq
Plotting Nts frequency for mapped reads extracted from BAM...
EDAplotQuality
Plotting Quality scores for mapped reads extracted from BAM...
EDAreadNumber
Plotting the number of mapped reads extracted from BAM files
edgerInterface
graphical interface to edgeR library.
edgeRNorm
This function scale-normalize NGS raw data as described by...
EG2probeset
This function allows to link GeneBank and Entrez Gene ids to...
erankProdAltSpl
Implementation of the Rank Product method for the detection...
erankProdAltSplFilterl
Filtering Rank Product results for the detection of...
eSet4meV
This function allows to reformat an eSet to be loaded in meV...
exonContrasts
Defining t-test regularized p-values
exonScaffold
stand alone function to generate a scaffold containing only...
exonsSpecific2as
Defining the exons associated to the various alternative...
exonTopTableExtract
Extracts data on the basis of a defined t-test regularized...
extractAffyids
Extracting probe ids associated to a specific Gene Ontology...
extractmirTargets
Extract miRNA targets showing a opposite regulation with...
filteringmiRtargets
Subsetting an expression set using a list of gene which are...
filteringTable
Filtering a tab delimited file
geneExonLibs
Download the Library files for gene and exon analysis
genomePlot
This function plots average intensity signals for two group...
genomeStudioReformat
The present function reformat an expression file exported by...
geoVSbioc
linking GEO platforms to available BioC annotations libraries
getNGSannotation
Retrieving genome annotation from ENSEMBL
GOenrichment
Searching for Gene Ontology enriched terms within a set of...
hsfa
Human microRNA data set
inspecting.one.splice.index
Plotting on the profiles of splice indexes for a transcript...
inspecting.splice.index
Plotting on a pdf file the profiles of splice indexes
intensityFilter
intensity filtering with a mouse click
IPAlistFilter
Filtering an expression set using a set of Entrez genes...
iqrFilter
Interquantile filtering with a mouse click
limma2paired
graphical interface apply linear model to two sample groups...
limmaExons
graphical interface to limma for alternative splicing...
listFilter
Subsetting an expression set using a list of Affymetrix ids
makeBED15
This function creates files in BED15 format to be loaded on...
makeGCcontent
Building a list of gene-level GC frequencies
makeGeneScaffold
Building a GRange object at chromosome level on UCSC genome...
makeSam
makeSam
mapping2ensembl
Associating e-level probe sets to entrez gene exonic...
mapping2exon
This function maps on exon-level Probe Selection Region (PSR)...
mapping2RefSeq
This function maps on NCBI Reference sequences spliced exons...
masigpro
The function executes maSigPro analysis
masigpro.edesign
The function creates an edesign object needed to run maSigPro
masigpro.view
The function allows the visualization of maSigPro results
metaArrayIC
Graphical interface to metaArray Integrative Correlation...
miRNAbowtieRun
Primary mapping of short reads with Bowtie/Picard for miRNA
ML.edesign
The function creates an data frame containing the parameters...
mmfa
Mouse microRNA data set
mRNAbowtieRun
Primary mapping of short reads with Bowtie/Picard for...
mRNAmiRCor
Filtering by mean of correlation between expression data and...
myExpresso
Running the affy expresso function with the widget
ncHs.data
Subset of genomic regions with ncRNA of Homo sapiens
ncMm.data
Subset of genomic regions with ncRNA of Mus musculus
ncRn.data
Subset of genomic regions with ncRNA in Rattus norvegicus
ncScaffold
stand alone function to generate a scaffold containing only...
NGSreformat
reformating output of NGS primary tools software
normBoxplot
Box plot of the arrays data available in NormalizeAffyData...
ocPlotHist
Gene/Exon level density plots
ocPlotPCA
Gene/Exon level density plots
oneChannelGUI
Starting oneChannelGUI package
oneChannelGUI-package
Set of functions extending the capability of affylmGUI...
OpenLargefiles
This function loads large data set made from tab delimited...
OpenmRNABam
This function loads Bam files generated by local mapping with...
plierToZero
Setting to 0 low log2 intensity values generated with plier
plotGO
Plotting parents of a GO term with few mouse click
PlotOptionsv1
A modified version of the function used in affyPLM library
plotVariantSI
This function plots on UCSC genome browser data derived by...
qcMDS
This function plots the sample relations based on...
rankingConversion
This function transforms intensity data in normalized ranks
rankProd
graphical interface to rank product method implemented in...
rawBoxplotPN
Plotting raw log2 intensities from controls
rawpCheck
Raw p-value distribution from limma analysis by a mouse click
Reads2logos
Extracting info on the counts associated to a differentially...
refiningPeaks
This function refines the structure of the genomics peaks,...
reformatGdl
This function reorganizes single NGS data in a matrix to be...
refseqDownload
Retrieving Reference Sequences from NCBI ftp
retrieveMirTargets
graphical interface to RmiR.Hs.miRNA library.
retrievePSRseq
This function, given a file containing exon-level probesets...
retrievePSRseq1gid
This function, given a gene-level probeset id, retrieves...
reviqrFilter
Reverse interquantile filtering with a mouse click
RmiRInterface
graphical interface to RmiR library.
rnfa
Rat microRNA data set
runningJetta
graphical interface to MADS/jetta R library.
sample.size.evaluation
The function executes and plots results from ssize and delta...
sample.size.evaluation1
The function executes functions from the sizepower packahe
showDataset
Grabbing info about the available expression set
showTopTable
Modification of the function immplemented in affylmGUI to...
siggenes
The function executes SAM analysis implemented in siggenes...
simFilter
This function allows filtering on the basis of the average...
spliceIndex
This function coverts the exon intenisty data in a slice...
standAloneAddingAnnotation
Attach to a data frame containing gene-level data derived...
standAloneBuildingLocalAnnotation
Creates a data frame with gene-level annotation data for exon...
targetWidget
Widget to create a target file to load .CEL files
templA
Generating a template A to be uploaded in Ingenuity Pathways...
tophat
TuxedoSuite
topTable.exons
topTable.exons
trainTest
Creating a training set and a test set by a mouse click
tuxedoSetup
tuxedoSetup
updateLibs
This function allows to update the present installation of...
variantExons
This function is used to generate a table containing...
variantSI
This function allows filtering on the basis of variant exons
VennDiagram
Venn diagrams using two or three lists
wrapNGS
Downloading software for NGS
wrapScaffold
A wrapper for makeGCcontent, makeGeneScaffold

Files in this package

oneChannelGUI/DESCRIPTION
oneChannelGUI/NAMESPACE
oneChannelGUI/NEWS
oneChannelGUI/R
oneChannelGUI/R/RNAseq.R
oneChannelGUI/R/chimeraGUI.R
oneChannelGUI/R/classificationmenu.R
oneChannelGUI/R/dataminingmenu.R
oneChannelGUI/R/dexseq.R
oneChannelGUI/R/exonmenu.R
oneChannelGUI/R/filemenu.R
oneChannelGUI/R/filteringmenu.R
oneChannelGUI/R/generaltoolsmenu.R
oneChannelGUI/R/helpmenu.R
oneChannelGUI/R/initialize.extAffylmGUI.R
oneChannelGUI/R/modellingstatmenu.R
oneChannelGUI/R/normalizemenu.R
oneChannelGUI/R/oneChannelGUI.R
oneChannelGUI/R/oneChannelGUI.start.R
oneChannelGUI/R/permutationstatmenu.R
oneChannelGUI/R/qcmenu.R
oneChannelGUI/R/reformatmenu.R
oneChannelGUI/R/standalonefunctions.R
oneChannelGUI/R/targetmenu.R
oneChannelGUI/R/tuxedo.R
oneChannelGUI/R/zzz.R
oneChannelGUI/build
oneChannelGUI/build/vignette.rds
oneChannelGUI/data
oneChannelGUI/data/bofa.rda
oneChannelGUI/data/chrLength.rda
oneChannelGUI/data/geoVSbioc.rda
oneChannelGUI/data/hsfa.rda
oneChannelGUI/data/mmfa.rda
oneChannelGUI/data/ncHs.data.rda
oneChannelGUI/data/ncMm.data.rda
oneChannelGUI/data/ncRn.data.rda
oneChannelGUI/data/rnfa.rda
oneChannelGUI/inst
oneChannelGUI/inst/CITATION
oneChannelGUI/inst/batch
oneChannelGUI/inst/batch/batch_dexseq_exon.R
oneChannelGUI/inst/doc
oneChannelGUI/inst/doc/Exon-level.analysis.Rnw
oneChannelGUI/inst/doc/Exon-level.analysis.pdf
oneChannelGUI/inst/doc/RNAseq.Rnw
oneChannelGUI/inst/doc/RNAseq.pdf
oneChannelGUI/inst/doc/gene-level.analysis.Rnw
oneChannelGUI/inst/doc/gene-level.analysis.pdf
oneChannelGUI/inst/doc/install.R
oneChannelGUI/inst/doc/install.Rnw
oneChannelGUI/inst/doc/install.pdf
oneChannelGUI/inst/doc/standAloneFunctions.Rnw
oneChannelGUI/inst/doc/standAloneFunctions.pdf
oneChannelGUI/inst/etc
oneChannelGUI/inst/etc/affylmGUI-menus.affy.txt
oneChannelGUI/inst/etc/affylmGUI-menus.exon.txt
oneChannelGUI/inst/etc/affylmGUI-menus.gene.txt
oneChannelGUI/inst/etc/affylmGUI-menus.illumina.txt
oneChannelGUI/inst/etc/affylmGUI-menus.large.datasets.txt
oneChannelGUI/inst/etc/affylmGUI-menus.ngs.datasets.txt
oneChannelGUI/inst/etc/localData.txt
oneChannelGUI/inst/etc/netaffxUpdates.txt
oneChannelGUI/inst/perl_scripts
oneChannelGUI/inst/perl_scripts/Adapter_trimCRA.pl
oneChannelGUI/inst/perl_scripts/MicroRazerSENSEMBL2genominator.hs.pl
oneChannelGUI/inst/perl_scripts/README.txt
oneChannelGUI/inst/perl_scripts/bta_precursor.fa
oneChannelGUI/inst/perl_scripts/fastq_to_fasta.pl
oneChannelGUI/inst/perl_scripts/hsa_precursor.fa
oneChannelGUI/inst/perl_scripts/mmu_precursor.fa
oneChannelGUI/inst/perl_scripts/rno_precursor.fa
oneChannelGUI/inst/perl_scripts/shrimp2bed.mm.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.hs.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.mirbase.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.mm.pl
oneChannelGUI/inst/perl_scripts/shrimpENSEMBL2genominator.nc.pl
oneChannelGUI/man
oneChannelGUI/man/AptMidas.Rd
oneChannelGUI/man/EDANtFreq.Rd
oneChannelGUI/man/EDAplotQuality.Rd
oneChannelGUI/man/EDAreadNumber.Rd
oneChannelGUI/man/EG2probeset.Rd
oneChannelGUI/man/GOenrichment.Rd
oneChannelGUI/man/IPAlistFilter.Rd
oneChannelGUI/man/ML.edesign.Rd
oneChannelGUI/man/NGSreformat.Rd
oneChannelGUI/man/OpenBeadStudioFiles.rd
oneChannelGUI/man/OpenLargefiles.Rd
oneChannelGUI/man/OpenmRNABam.Rd
oneChannelGUI/man/PlotOptionsv1.Rd
oneChannelGUI/man/Reads2logos.Rd
oneChannelGUI/man/RmiRInterface.Rd
oneChannelGUI/man/VennDiagram.Rd
oneChannelGUI/man/adaptorTrimm.Rd
oneChannelGUI/man/annotateNGSeset.Rd
oneChannelGUI/man/bayseqInterface.Rd
oneChannelGUI/man/biomartFilter.Rd
oneChannelGUI/man/bofa.Rd
oneChannelGUI/man/bowtieBuilt.Rd
oneChannelGUI/man/bowtieDownload.Rd
oneChannelGUI/man/bowtieGenomes.Rd
oneChannelGUI/man/buildingLocalAnnotation.Rd
oneChannelGUI/man/chrLength.Rd
oneChannelGUI/man/colExtract.Rd
oneChannelGUI/man/combineGeoMSF.Rd
oneChannelGUI/man/combining2eSet.Rd
oneChannelGUI/man/consistentFilters.Rd
oneChannelGUI/man/cosieWrapper.Rd
oneChannelGUI/man/createGeoTarget.Rd
oneChannelGUI/man/crosshybFilter.Rd
oneChannelGUI/man/ctrtrtHeatmap.Rd
oneChannelGUI/man/desGenes.Rd
oneChannelGUI/man/dexCounts.Rd
oneChannelGUI/man/dexExons.Rd
oneChannelGUI/man/dfMAplot.Rd
oneChannelGUI/man/eSet4meV.Rd
oneChannelGUI/man/edgeRNorm.Rd
oneChannelGUI/man/edgerInterface.Rd
oneChannelGUI/man/erankProdAltSpl.Rd
oneChannelGUI/man/erankProdAltSplFilterl.Rd
oneChannelGUI/man/exonContrasts.Rd
oneChannelGUI/man/exonScaffold.Rd
oneChannelGUI/man/exonTopTableExtract.Rd
oneChannelGUI/man/exonsSpecific2as.Rd
oneChannelGUI/man/extractAffyids.Rd
oneChannelGUI/man/extractmirTargets.Rd
oneChannelGUI/man/filteringTable.Rd
oneChannelGUI/man/filteringmiRtargets.Rd
oneChannelGUI/man/geneExonLibs.Rd
oneChannelGUI/man/genomePlot.Rd
oneChannelGUI/man/genomeStudioReformat.Rd
oneChannelGUI/man/geoVSbioc.Rd
oneChannelGUI/man/getNGSannotation.Rd
oneChannelGUI/man/hsfa.Rd
oneChannelGUI/man/inspecting.one.splice.index.Rd
oneChannelGUI/man/inspecting.splice.index.Rd
oneChannelGUI/man/intensityFilter.Rd
oneChannelGUI/man/iqrFilter.Rd
oneChannelGUI/man/limma2paired.Rd
oneChannelGUI/man/limmaExons.Rd
oneChannelGUI/man/listFilter.Rd
oneChannelGUI/man/mRNAbowtieRun.Rd
oneChannelGUI/man/mRNAmiRCor.Rd
oneChannelGUI/man/makeBED15.Rd
oneChannelGUI/man/makeGCcontent.Rd
oneChannelGUI/man/makeGeneScaffold.Rd
oneChannelGUI/man/makeSam.Rd
oneChannelGUI/man/mapping2RefSeq.Rd
oneChannelGUI/man/mapping2ensembl.Rd
oneChannelGUI/man/mapping2exon.Rd
oneChannelGUI/man/masigpro.Rd
oneChannelGUI/man/masigpro.edesign.Rd
oneChannelGUI/man/masigpro.view.Rd
oneChannelGUI/man/metaArrayIC.Rd
oneChannelGUI/man/metaArrayMerge.rd
oneChannelGUI/man/miRNAbowtieRun.Rd
oneChannelGUI/man/mmfa.Rd
oneChannelGUI/man/myExpresso.Rd
oneChannelGUI/man/ncHs.data.Rd
oneChannelGUI/man/ncMm.data.Rd
oneChannelGUI/man/ncRn.data.Rd
oneChannelGUI/man/ncScaffold.Rd
oneChannelGUI/man/normBoxplot.Rd
oneChannelGUI/man/ocPlotHist.Rd
oneChannelGUI/man/ocPlotPCA.Rd
oneChannelGUI/man/oneChannelGUI-package.Rd
oneChannelGUI/man/oneChannelGUI.Rd
oneChannelGUI/man/plierToZero.Rd
oneChannelGUI/man/plotGO.Rd
oneChannelGUI/man/plotVariantSI.Rd
oneChannelGUI/man/qcMDS.Rd
oneChannelGUI/man/rankProd.Rd
oneChannelGUI/man/rankingConversion.Rd
oneChannelGUI/man/rawBoxplotPN.Rd
oneChannelGUI/man/rawpCheck.Rd
oneChannelGUI/man/refiningPeaks.Rd
oneChannelGUI/man/reformatGdl.Rd
oneChannelGUI/man/refseqDownload.Rd
oneChannelGUI/man/retrieveMirTargets.Rd
oneChannelGUI/man/retrievePSRseq.Rd
oneChannelGUI/man/retrievePSRseq1gid.Rd
oneChannelGUI/man/reviqrFilter.Rd
oneChannelGUI/man/rnfa.Rd
oneChannelGUI/man/runningJetta.Rd
oneChannelGUI/man/sample.size.evaluation.Rd
oneChannelGUI/man/sample.size.evaluation1.Rd
oneChannelGUI/man/showDataset.Rd
oneChannelGUI/man/showTopTable.Rd
oneChannelGUI/man/siggenes.Rd
oneChannelGUI/man/simFilter.Rd
oneChannelGUI/man/spliceIndex.Rd
oneChannelGUI/man/standAloneAddingAnnotation.Rd
oneChannelGUI/man/standAloneBuildingLocalAnnotation.Rd
oneChannelGUI/man/targetWidget.Rd
oneChannelGUI/man/templA.Rd
oneChannelGUI/man/topTable.exons.Rd
oneChannelGUI/man/tophat.Rd
oneChannelGUI/man/trainTest.Rd
oneChannelGUI/man/tuxedoSetup.Rd
oneChannelGUI/man/updateLibs.Rd
oneChannelGUI/man/variantExons.Rd
oneChannelGUI/man/variantSI.Rd
oneChannelGUI/man/wrapNGS.Rd
oneChannelGUI/man/wrapScaffold.Rd
oneChannelGUI/vignettes
oneChannelGUI/vignettes/Exon-level.analysis.Rnw
oneChannelGUI/vignettes/RNAseq.Rnw
oneChannelGUI/vignettes/fig1.png
oneChannelGUI/vignettes/fig2.png
oneChannelGUI/vignettes/fig3.png
oneChannelGUI/vignettes/fig4.png
oneChannelGUI/vignettes/fig5.png
oneChannelGUI/vignettes/fig6.png
oneChannelGUI/vignettes/fig7.png
oneChannelGUI/vignettes/fig8.png
oneChannelGUI/vignettes/fig9.png
oneChannelGUI/vignettes/fignew1.png
oneChannelGUI/vignettes/fignew10.png
oneChannelGUI/vignettes/fignew11.png
oneChannelGUI/vignettes/fignew12.png
oneChannelGUI/vignettes/fignew13.png
oneChannelGUI/vignettes/fignew14.png
oneChannelGUI/vignettes/fignew15.png
oneChannelGUI/vignettes/fignew16.png
oneChannelGUI/vignettes/fignew17.png
oneChannelGUI/vignettes/fignew18.png
oneChannelGUI/vignettes/fignew19.png
oneChannelGUI/vignettes/fignew2.png
oneChannelGUI/vignettes/fignew20.png
oneChannelGUI/vignettes/fignew21.png
oneChannelGUI/vignettes/fignew22.png
oneChannelGUI/vignettes/fignew23.png
oneChannelGUI/vignettes/fignew24.png
oneChannelGUI/vignettes/fignew25.png
oneChannelGUI/vignettes/fignew26.png
oneChannelGUI/vignettes/fignew27.png
oneChannelGUI/vignettes/fignew28.png
oneChannelGUI/vignettes/fignew29.png
oneChannelGUI/vignettes/fignew3.png
oneChannelGUI/vignettes/fignew30.png
oneChannelGUI/vignettes/fignew31.png
oneChannelGUI/vignettes/fignew32.png
oneChannelGUI/vignettes/fignew33.png
oneChannelGUI/vignettes/fignew34.png
oneChannelGUI/vignettes/fignew35.png
oneChannelGUI/vignettes/fignew36.png
oneChannelGUI/vignettes/fignew37.png
oneChannelGUI/vignettes/fignew38.png
oneChannelGUI/vignettes/fignew39.png
oneChannelGUI/vignettes/fignew4.png
oneChannelGUI/vignettes/fignew40.png
oneChannelGUI/vignettes/fignew41.png
oneChannelGUI/vignettes/fignew42.pdf
oneChannelGUI/vignettes/fignew43.png
oneChannelGUI/vignettes/fignew44.png
oneChannelGUI/vignettes/fignew45.png
oneChannelGUI/vignettes/fignew46.png
oneChannelGUI/vignettes/fignew47.png
oneChannelGUI/vignettes/fignew48.png
oneChannelGUI/vignettes/fignew49.png
oneChannelGUI/vignettes/fignew5.png
oneChannelGUI/vignettes/fignew50.png
oneChannelGUI/vignettes/fignew51.png
oneChannelGUI/vignettes/fignew52.png
oneChannelGUI/vignettes/fignew53.png
oneChannelGUI/vignettes/fignew54.png
oneChannelGUI/vignettes/fignew55.png
oneChannelGUI/vignettes/fignew56.png
oneChannelGUI/vignettes/fignew57.png
oneChannelGUI/vignettes/fignew58.png
oneChannelGUI/vignettes/fignew59.png
oneChannelGUI/vignettes/fignew6.png
oneChannelGUI/vignettes/fignew60.png
oneChannelGUI/vignettes/fignew61.png
oneChannelGUI/vignettes/fignew62.png
oneChannelGUI/vignettes/fignew63.png
oneChannelGUI/vignettes/fignew64.png
oneChannelGUI/vignettes/fignew65.png
oneChannelGUI/vignettes/fignew66.png
oneChannelGUI/vignettes/fignew67.png
oneChannelGUI/vignettes/fignew68.png
oneChannelGUI/vignettes/fignew69.png
oneChannelGUI/vignettes/fignew7.png
oneChannelGUI/vignettes/fignew70.png
oneChannelGUI/vignettes/fignew71.png
oneChannelGUI/vignettes/fignew72.png
oneChannelGUI/vignettes/fignew73.png
oneChannelGUI/vignettes/fignew74.png
oneChannelGUI/vignettes/fignew75.png
oneChannelGUI/vignettes/fignew76.png
oneChannelGUI/vignettes/fignew77.png
oneChannelGUI/vignettes/fignew78.png
oneChannelGUI/vignettes/fignew79.png
oneChannelGUI/vignettes/fignew8.png
oneChannelGUI/vignettes/fignew80.png
oneChannelGUI/vignettes/fignew81.png
oneChannelGUI/vignettes/fignew82.png
oneChannelGUI/vignettes/fignew83.png
oneChannelGUI/vignettes/fignew84.png
oneChannelGUI/vignettes/fignew85.png
oneChannelGUI/vignettes/fignew86.png
oneChannelGUI/vignettes/fignew9.png
oneChannelGUI/vignettes/gene-level.analysis.Rnw
oneChannelGUI/vignettes/inst1.png
oneChannelGUI/vignettes/install.Rnw
oneChannelGUI/vignettes/ngs0.png
oneChannelGUI/vignettes/ngs1.png
oneChannelGUI/vignettes/ngs10.png
oneChannelGUI/vignettes/ngs11.png
oneChannelGUI/vignettes/ngs12.png
oneChannelGUI/vignettes/ngs13.png
oneChannelGUI/vignettes/ngs14.png
oneChannelGUI/vignettes/ngs15.png
oneChannelGUI/vignettes/ngs16.png
oneChannelGUI/vignettes/ngs2.png
oneChannelGUI/vignettes/ngs3.png
oneChannelGUI/vignettes/ngs4.png
oneChannelGUI/vignettes/ngs5.png
oneChannelGUI/vignettes/ngs6.png
oneChannelGUI/vignettes/ngs7.png
oneChannelGUI/vignettes/ngs8.png
oneChannelGUI/vignettes/ngs9.png
oneChannelGUI/vignettes/standAloneFunctions.Rnw