exonContrasts: Defining t-test regularized p-values
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
Usage
Details
Author(s)
Description
This function constructs the contrasts as affylmGUI but applied to exon-level. It
also perfoms Bayes regularization. Raw p-values are plotted to see if BH or BY type I
error correction can be applied. Corrected p-values are saved and used for extraction of
alternative spliced exons.
Usage
1
Details
It is important to note that if multiple contrasts should be considered after the calculation of each of them
it is essential to extract the alternative spliced exons with exonTopTableExtract, because everytime exonContrasts
is run it overwrites the previous results.
Author(s)
Raffaele A Calogero
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
R Package Documentation
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Description Usage Details Author(s)
Description
This function constructs the contrasts as affylmGUI but applied to exon-level. It also perfoms Bayes regularization. Raw p-values are plotted to see if BH or BY type I error correction can be applied. Corrected p-values are saved and used for extraction of alternative spliced exons.
Usage
1 |
Details
It is important to note that if multiple contrasts should be considered after the calculation of each of them it is essential to extract the alternative spliced exons with exonTopTableExtract, because everytime exonContrasts is run it overwrites the previous results.
Author(s)
Raffaele A Calogero
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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