This function filters the data produced by exonContrasts to extract a list of alternative spliced exons that are saved in a file and they can be used for further analysis, i.e. extracting only variant exons. The function also filter the data present in the onechannelGUI project bot at gene and exon-level.
It is important to note that if multiple contrasts should be considered after the calculation of each of them it is essential to extract the alternative spliced exons with exonTopTableExtract, because everytime exonContrasts is run it overwrites the previous results.
Raffaele A Calogero
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