intensityFilter: intensity filtering with a mouse click
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops

Description Usage Details Note Author(s) See Also

This function removes all probe sets in which a certain percentage of experiments is below a user defined intensity threshold.

1	intensityFilter()

The aim of non specific filtering is to remove the genes that are unlikely to carry information about the phenotypes under investigation. This filtering remove genes that do not have a centain level of, user defined, intensities in a set of, user defined, experiments.

Factor analysis will be limited by the problem of having fewer samples than genes. Therefore, preselecting a smaller set of genes is definetively helpful.

Raffaele A Calogero

iqrFilter, listFilter, IPAlistFilter

oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.