filteringmiRtargets: Subsetting an expression set using a list of gene which are...

Description Usage Details Note Author(s) See Also


This function subsets the normalized expression set present in the affylmGUI environment on the basis of a list of probe set ids extracted on the basis of the predicted gene targets for a microRNA. Extraction is based on predicted targets for miRNA in human.




The function asks to the user to select a file containing probe set ids separated by carriage return. The file should contain only one column and no header.


In transcriptional studies focusing on genes characterized by specific feature (i.e. transcription factor elements in promoters) the best filtering approach is selecting only those genes linked to the interesting biological feature.


Raffaele A Calogero

See Also

IPAlistFilter, iqrFilter, intensityFilter

oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.