filteringmiRtargets: Subsetting an expression set using a list of gene which are...
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
Usage
Details
Note
Author(s)
See Also
Description
This function subsets the normalized expression set present in the affylmGUI environment
on the basis of a list of probe set ids extracted on the basis of the predicted gene targets for a microRNA.
Extraction is based on predicted targets for miRNA in human.
Usage
1
Details
The function asks to the user to select a file containing probe set ids separated by
carriage return. The file should contain only one column and no header.
Note
In transcriptional studies focusing on genes characterized by specific feature
(i.e. transcription factor elements in promoters) the best filtering approach is
selecting only those genes linked to the interesting biological feature.
Author(s)
Raffaele A Calogero
See Also
IPAlistFilter, iqrFilter, intensityFilter
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
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Description Usage Details Note Author(s) See Also
Description
This function subsets the normalized expression set present in the affylmGUI environment on the basis of a list of probe set ids extracted on the basis of the predicted gene targets for a microRNA. Extraction is based on predicted targets for miRNA in human.
Usage
1 |
Details
The function asks to the user to select a file containing probe set ids separated by carriage return. The file should contain only one column and no header.
Note
In transcriptional studies focusing on genes characterized by specific feature (i.e. transcription factor elements in promoters) the best filtering approach is selecting only those genes linked to the interesting biological feature.
Author(s)
Raffaele A Calogero
See Also
IPAlistFilter, iqrFilter, intensityFilter
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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