GOenrichment: Searching for Gene Ontology enriched terms within a set of...
In oneChannelGUI: A graphical interface designed to facilitate analysis of microarrays and miRNA/RNA-seq data on laptops
Description
Usage
Details
Author(s)
References
See Also
Description
In Bioconductor is available a library called GOstats, which allows the calculation of enriched GO terms
within a set of differentially expressed probe sets. This is a graphical implementation of a function allowing the extraction of GO enriched term in a sub set of differentially expressed probe sets.
To know more about it see GOstat library
Usage
1
Details
The function asks to the user to select a file containing probe set ids separated by
carriage return. The file should contain only one column and no header.
The set of enriched terms are plotted in red over the graph of all GO term associated
to the differentially expressed genes. GO enriched terms can be also saved in a tab delimited file.
Author(s)
Raffaele A Calogero
References
Robert Gentleman GOstat package
See Also
extractAffyids, plotGO
oneChannelGUI documentation built on Nov. 17, 2017, 11:02 a.m.
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Description Usage Details Author(s) References See Also
Description
In Bioconductor is available a library called GOstats, which allows the calculation of enriched GO terms within a set of differentially expressed probe sets. This is a graphical implementation of a function allowing the extraction of GO enriched term in a sub set of differentially expressed probe sets. To know more about it see GOstat library
Usage
1 |
Details
The function asks to the user to select a file containing probe set ids separated by carriage return. The file should contain only one column and no header. The set of enriched terms are plotted in red over the graph of all GO term associated to the differentially expressed genes. GO enriched terms can be also saved in a tab delimited file.
Author(s)
Raffaele A Calogero
References
Robert Gentleman GOstat package
See Also
extractAffyids, plotGO
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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