RefPlus: A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

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The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author
Kai-Ming Chang <kaiming@gmail.com>, Chris Harbron <Chris.Harbron@astrazeneca.com>, Marie C South <Marie.C.South@astrazeneca.com>
Date of publication
None
Maintainer
Kai-Ming Chang <kaiming@gmail.com>
License
GPL (>= 2)
Version
1.44.0

View on Bioconductor

Man pages

colMedians
Derive column medians of a numerical matrix
normalize.quantiles2
Reference quantile normalization
RefPlus-package
RMA based on reference microarrays: RMA+ and RMA++ methods
rma.para
Fitting a RMA model
rmaplus
Derive RMA+ intensities
rmaref.predict
A function used by the rmaplus function

Files in this package

RefPlus/DESCRIPTION
RefPlus/NAMESPACE
RefPlus/R
RefPlus/R/colMedians.R
RefPlus/R/normalize.quantiles2.R
RefPlus/R/rma.para.R
RefPlus/R/rmaplus.R
RefPlus/R/rmaref.predict.R
RefPlus/build
RefPlus/build/vignette.rds
RefPlus/inst
RefPlus/inst/doc
RefPlus/inst/doc/RefPlus.R
RefPlus/inst/doc/RefPlus.Rnw
RefPlus/inst/doc/RefPlus.pdf
RefPlus/man
RefPlus/man/RefPlus-package.Rd
RefPlus/man/colMedians.Rd
RefPlus/man/normalize.quantiles2.Rd
RefPlus/man/rma.para.Rd
RefPlus/man/rmaplus.Rd
RefPlus/man/rmaref.predict.Rd
RefPlus/vignettes
RefPlus/vignettes/An_Exploration_of_Extensions_to_the_RMA_Algorithm.pdf
RefPlus/vignettes/Extensions_to_RMA_Algorithm.pdf
RefPlus/vignettes/RefPlus.Rnw
RefPlus/vignettes/index.html