normalize.quantiles2: Reference quantile normalization

Description Usage Arguments Details Value Author(s) References See Also Examples

Description

Quantile normalization to a reference set.

Usage

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normalize.quantiles2(X, Reference.Quantiles)

Arguments

X

A matrix of probe intensity data to be reference quantile normalized.

Reference.Quantiles

A vector of the reference quantiles that the probe intensities of a sample is normalized to.

Details

The function quantile normalized the probe intensities of a set of microarrays to a set of reference quantiles which are formed by a set of reference microarrays.

Value

The reference quantile normalized probe intensities.

Author(s)

Kai-Ming Chang([email protected])

References

Chang,K.M., Harbron,C., South,M.C. (2006) An Exploration of Extensions to the RMA Algorithm. Available with the RefPlus package.

See Also

normalize.quantiles

Examples

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A<-matrix(rnorm(30),10,3)
core<-1:10
An<-normalize.quantiles2(A,core)
rank(A[,1])==An[,1]

RefPlus documentation built on May 2, 2018, 4:28 a.m.