rmaref.predict: A function used by the rmaplus function

In RefPlus: A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Description

Derive RMA+ expression. Used by rmaplus. The function does not background correct and normalize the probe-level data.

Usage

rmaref.predict(Future, p.e)

Arguments

Future	An affybatch object of the microarrays to be summarized by the RMA+ method.
p.e	The pre-stored list of the probe.effects.It is a probe.coefs object of PLMset class in affyPLM package.

Value

The RMA+ intensities of Future.

Note

Use the rmaplus function to normalize Future to pre-stored reference quantiles and correct the probe effects to obtain the RMA+ intensities.

Author(s)

Kai-Ming Chang([e-mail])

References

Chang,K.M., Harbron,C., South,M.C. (2006) An Exploration of Extensions to the RMA Algorithm. Available with the RefPlus package.

See Also

PLMset-class,rma.para, rmaplus

RefPlus documentation built on Nov. 8, 2020, 5:20 p.m.