GOTHiC: Binomial test for Hi-C data analysis

This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.

Getting started

Package details

AuthorBorbala Mifsud and Robert Sugar
Bioconductor views Epigenetics HiC ImmunoOncology Preprocessing Sequencing
MaintainerBorbala Mifsud <[email protected]>
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:

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GOTHiC documentation built on Oct. 31, 2019, 3:20 a.m.