GOTHiC: Binomial test for Hi-C data analysis

This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.

AuthorBorbala Mifsud and Robert Sugar
Date of publicationNone
MaintainerBorbala Mifsud <Borbala.Mifsud@cancer.org.uk>
LicenseGPL-3
Version1.10.0

View on Bioconductor

Files in this package

GOTHiC/DESCRIPTION
GOTHiC/NAMESPACE
GOTHiC/R
GOTHiC/R/GOTHiC.R
GOTHiC/build
GOTHiC/build/vignette.rds
GOTHiC/data
GOTHiC/data/datalist
GOTHiC/data/lymphoid_chr20_paired_filtered.rdata
GOTHiC/inst
GOTHiC/inst/doc
GOTHiC/inst/doc/package_vignettes.R
GOTHiC/inst/doc/package_vignettes.Snw
GOTHiC/inst/doc/package_vignettes.pdf
GOTHiC/man
GOTHiC/man/GOTHiC.Rd GOTHiC/man/GOTHiChicup.Rd GOTHiC/man/filtered.Rd GOTHiC/man/mapReadsToRestrictionSites.Rd GOTHiC/man/pairReads.Rd
GOTHiC/vignettes
GOTHiC/vignettes/lymphoid_chr20_pvalue_distribution.pdf
GOTHiC/vignettes/package_vignettes.Snw

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.