This is a Hi-C analysis package using a cumulative binomial test to detect interactions between distal genomic loci that have significantly more reads than expected by chance in Hi-C experiments. It takes mapped paired NGS reads as input and gives back the list of significant interactions for a given bin size in the genome.
|Author||Borbala Mifsud and Robert Sugar|
|Bioconductor views||Epigenetics HiC Preprocessing Sequencing|
|Maintainer||Borbala Mifsud <[email protected]>|
|Package repository||View on Bioconductor|
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