filtered: A GenomicRangesList object used as an example in the GOTHiC...
In GOTHiC: Binomial test for Hi-C data analysis
Description
Usage
Format
Author(s)
See Also
Examples
Description
filtered is a GenomicRangesList example object used as an example for the binomialHiC package. This GenomicRangesList contains reads from a human lymphoblastoid cell line HiC experiment (Lieberman-Aiden et al. 2009) for chr20, that were mapped to the genome, paired and PCR duplicate-filtered.
Usage
1
Format
The format is:
GenomicRangesList with 2 slots:
$paired_reads_1 contains the coordinates for one end of the paired reads
$paired_reads_2 contains the coordinates for the other end of the paired reads
Author(s)
Borbala Gerle and Robert Sugar
See Also
Examples
1
GOTHiC documentation built on Nov. 8, 2020, 8:25 p.m.
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Description Usage Format Author(s) See Also Examples
Description
filtered is a GenomicRangesList example object used as an example for the binomialHiC package. This GenomicRangesList contains reads from a human lymphoblastoid cell line HiC experiment (Lieberman-Aiden et al. 2009) for chr20, that were mapped to the genome, paired and PCR duplicate-filtered.
Usage
1 |
Format
The format is: GenomicRangesList with 2 slots: $paired_reads_1 contains the coordinates for one end of the paired reads $paired_reads_2 contains the coordinates for the other end of the paired reads
Author(s)
Borbala Gerle and Robert Sugar
See Also
Examples
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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