filtered: A GenomicRangesList object used as an example in the GOTHiC...

Description Usage Format Author(s) See Also Examples

Description

filtered is a GenomicRangesList example object used as an example for the binomialHiC package. This GenomicRangesList contains reads from a human lymphoblastoid cell line HiC experiment (Lieberman-Aiden et al. 2009) for chr20, that were mapped to the genome, paired and PCR duplicate-filtered.

Usage

1

Format

The format is: GenomicRangesList with 2 slots: $paired_reads_1 contains the coordinates for one end of the paired reads $paired_reads_2 contains the coordinates for the other end of the paired reads

Author(s)

Borbala Gerle and Robert Sugar

See Also

mapReadsToRestrictionSites

Examples

1

GOTHiC documentation built on Nov. 17, 2017, 11:05 a.m.

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