ccagc/QDNAseq: Quantitative DNA Sequencing for Chromosomal Aberrations
Quantitative DNA sequencing for chromosomal aberrations. The genome is divided into non-overlapping fixed-sized bins, number of sequence reads in each counted, adjusted with a simultaneous two-dimensional loess correction for sequence mappability and GC content, and filtered to remove spurious regions in the genome. Downstream steps of segmentation and calling are also implemented via packages DNAcopy and CGHcall, respectively.
Getting started
Browse package contents
Package details |
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| Bioconductor views | CopyNumberVariation DNASeq Genetics GenomeAnnotation Preprocessing QualityControl Sequencing |
| Maintainer | |
| License | GPL |
| Version | 1.35.0 |
| URL | https://github.com/ccagc/QDNAseq |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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